Royce TE - Search Results

1

A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.

Du J, Rozowsky JS, Korbel JO, Zhang ZD, Royce TE, Schultz MH, Snyder M, Gerstein M. Du J, et al. Among authors: royce te. Bioinformatics. 2006 Dec 15;22(24):3016-24. doi: 10.1093/bioinformatics/btl515. Epub 2006 Oct 12. Bioinformatics. 2006. PMID: 17038339

2

Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping.

Royce TE, Rozowsky JS, Bertone P, Samanta M, Stolc V, Weissman S, Snyder M, Gerstein M. Royce TE, et al. Trends Genet. 2005 Aug;21(8):466-75. doi: 10.1016/j.tig.2005.06.007. Trends Genet. 2005. PMID: 15979196 Free PMC article. Review.

3

Assessing the need for sequence-based normalization in tiling microarray experiments.

Royce TE, Rozowsky JS, Gerstein MB. Royce TE, et al. Bioinformatics. 2007 Apr 15;23(8):988-97. doi: 10.1093/bioinformatics/btm052. Epub 2007 Mar 25. Bioinformatics. 2007. PMID: 17387113

4

An efficient pseudomedian filter for tiling microrrays.

Royce TE, Carriero NJ, Gerstein MB. Royce TE, et al. BMC Bioinformatics. 2007 Jun 7;8:186. doi: 10.1186/1471-2105-8-186. BMC Bioinformatics. 2007. PMID: 17555595 Free PMC article.

5

Positional artifacts in microarrays: experimental verification and construction of COP, an automated detection tool.

Yu H, Nguyen K, Royce T, Qian J, Nelson K, Snyder M, Gerstein M. Yu H, et al. Nucleic Acids Res. 2007;35(2):e8. doi: 10.1093/nar/gkl871. Epub 2006 Dec 7. Nucleic Acids Res. 2007. PMID: 17158151 Free PMC article.

6

Regulation of gene expression by a metabolic enzyme.

Hall DA, Zhu H, Zhu X, Royce T, Gerstein M, Snyder M. Hall DA, et al. Science. 2004 Oct 15;306(5695):482-4. doi: 10.1126/science.1096773. Science. 2004. PMID: 15486299

7

Mismatch oligonucleotides in human and yeast: guidelines for probe design on tiling microarrays.

Seringhaus M, Rozowsky J, Royce T, Nagalakshmi U, Jee J, Snyder M, Gerstein M. Seringhaus M, et al. BMC Genomics. 2008 Dec 31;9:635. doi: 10.1186/1471-2164-9-635. BMC Genomics. 2008. PMID: 19117516 Free PMC article.

8

ExpressYourself: A modular platform for processing and visualizing microarray data.

Luscombe NM, Royce TE, Bertone P, Echols N, Horak CE, Chang JT, Snyder M, Gerstein M. Luscombe NM, et al. Among authors: royce te. Nucleic Acids Res. 2003 Jul 1;31(13):3477-82. doi: 10.1093/nar/gkg628. Nucleic Acids Res. 2003. PMID: 12824348 Free PMC article.

9

Distribution of NF-kappaB-binding sites across human chromosome 22.

Martone R, Euskirchen G, Bertone P, Hartman S, Royce TE, Luscombe NM, Rinn JL, Nelson FK, Miller P, Gerstein M, Weissman S, Snyder M. Martone R, et al. Among authors: royce te. Proc Natl Acad Sci U S A. 2003 Oct 14;100(21):12247-52. doi: 10.1073/pnas.2135255100. Epub 2003 Oct 3. Proc Natl Acad Sci U S A. 2003. PMID: 14527995 Free PMC article.

10

Global identification of human transcribed sequences with genome tiling arrays.

Bertone P, Stolc V, Royce TE, Rozowsky JS, Urban AE, Zhu X, Rinn JL, Tongprasit W, Samanta M, Weissman S, Gerstein M, Snyder M. Bertone P, et al. Among authors: royce te. Science. 2004 Dec 24;306(5705):2242-6. doi: 10.1126/science.1103388. Epub 2004 Nov 11. Science. 2004. PMID: 15539566

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