Speed TP - Search Results

1

Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data.

Carvalho B, Bengtsson H, Speed TP, Irizarry RA. Carvalho B, et al. Among authors: speed tp. Biostatistics. 2007 Apr;8(2):485-99. doi: 10.1093/biostatistics/kxl042. Epub 2006 Dec 22. Biostatistics. 2007. PMID: 17189563

2

Exploration, normalization, and summaries of high density oligonucleotide array probe level data.

Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP. Irizarry RA, et al. Among authors: speed tp. Biostatistics. 2003 Apr;4(2):249-64. doi: 10.1093/biostatistics/4.2.249. Biostatistics. 2003. PMID: 12925520

3

A benchmark for Affymetrix GeneChip expression measures.

Cope LM, Irizarry RA, Jaffee HA, Wu Z, Speed TP. Cope LM, et al. Among authors: speed tp. Bioinformatics. 2004 Feb 12;20(3):323-31. doi: 10.1093/bioinformatics/btg410. Bioinformatics. 2004. PMID: 14960458

4

Gene set enrichment analysis made simple.

Irizarry RA, Wang C, Zhou Y, Speed TP. Irizarry RA, et al. Among authors: speed tp. Stat Methods Med Res. 2009 Dec;18(6):565-75. doi: 10.1177/0962280209351908. Stat Methods Med Res. 2009. PMID: 20048385 Free PMC article.

5

Estimation and assessment of raw copy numbers at the single locus level.

Bengtsson H, Irizarry R, Carvalho B, Speed TP. Bengtsson H, et al. Among authors: speed tp. Bioinformatics. 2008 Mar 15;24(6):759-67. doi: 10.1093/bioinformatics/btn016. Epub 2008 Jan 19. Bioinformatics. 2008. PMID: 18204055

6

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias.

Bolstad BM, Irizarry RA, Astrand M, Speed TP. Bolstad BM, et al. Among authors: speed tp. Bioinformatics. 2003 Jan 22;19(2):185-93. doi: 10.1093/bioinformatics/19.2.185. Bioinformatics. 2003. PMID: 12538238

7

Summaries of Affymetrix GeneChip probe level data.

Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, Speed TP. Irizarry RA, et al. Among authors: speed tp. Nucleic Acids Res. 2003 Feb 15;31(4):e15. doi: 10.1093/nar/gng015. Nucleic Acids Res. 2003. PMID: 12582260 Free PMC article.

8

A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6.

Bengtsson H, Wirapati P, Speed TP. Bengtsson H, et al. Among authors: speed tp. Bioinformatics. 2009 Sep 1;25(17):2149-56. doi: 10.1093/bioinformatics/btp371. Epub 2009 Jun 17. Bioinformatics. 2009. PMID: 19535535 Free PMC article.

9

Experimental design and low-level analysis of microarray data.

Bolstad BM, Collin F, Simpson KM, Irizarry RA, Speed TP. Bolstad BM, et al. Among authors: speed tp. Int Rev Neurobiol. 2004;60:25-58. doi: 10.1016/S0074-7742(04)60002-X. Int Rev Neurobiol. 2004. PMID: 15474586 Review. No abstract available.

10

TumorBoost: normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays.

Bengtsson H, Neuvial P, Speed TP. Bengtsson H, et al. Among authors: speed tp. BMC Bioinformatics. 2010 May 12;11:245. doi: 10.1186/1471-2105-11-245. BMC Bioinformatics. 2010. PMID: 20462408 Free PMC article.

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