Geer LY - Search Results

1

Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry.

Chi A, Huttenhower C, Geer LY, Coon JJ, Syka JE, Bai DL, Shabanowitz J, Burke DJ, Troyanskaya OG, Hunt DF. Chi A, et al. Among authors: geer ly. Proc Natl Acad Sci U S A. 2007 Feb 13;104(7):2193-8. doi: 10.1073/pnas.0607084104. Epub 2007 Feb 7. Proc Natl Acad Sci U S A. 2007. PMID: 17287358 Free PMC article.

2

Analysis of intact proteins on a chromatographic time scale by electron transfer dissociation tandem mass spectrometry.

Chi A, Bai DL, Geer LY, Shabanowitz J, Hunt DF. Chi A, et al. Among authors: geer ly. Int J Mass Spectrom. 2007 Jan 1;259(1-3):197-203. doi: 10.1016/j.ijms.2006.09.030. Int J Mass Spectrom. 2007. PMID: 17364019 Free PMC article.

3

Analysis of the acidic proteome with negative electron-transfer dissociation mass spectrometry.

McAlister GC, Russell JD, Rumachik NG, Hebert AS, Syka JE, Geer LY, Westphall MS, Pagliarini DJ, Coon JJ. McAlister GC, et al. Among authors: geer ly. Anal Chem. 2012 Mar 20;84(6):2875-82. doi: 10.1021/ac203430u. Epub 2012 Mar 1. Anal Chem. 2012. PMID: 22335612 Free PMC article.

4

Increasing peptide identifications and decreasing search times for ETD spectra by pre-processing and calculation of parent precursor charge.

Sridhara V, Bai DL, Chi A, Shabanowitz J, Hunt DF, Bryant SH, Geer LY. Sridhara V, et al. Among authors: geer ly. Proteome Sci. 2012 Feb 9;10(1):8. doi: 10.1186/1477-5956-10-8. Proteome Sci. 2012. PMID: 22321509 Free PMC article.

5

Open mass spectrometry search algorithm.

Geer LY, Markey SP, Kowalak JA, Wagner L, Xu M, Maynard DM, Yang X, Shi W, Bryant SH. Geer LY, et al. J Proteome Res. 2004 Sep-Oct;3(5):958-64. doi: 10.1021/pr0499491. J Proteome Res. 2004. PMID: 15473683

6

Assessing data quality of peptide mass spectra obtained by quadrupole ion trap mass spectrometry.

Xu M, Geer LY, Bryant SH, Roth JS, Kowalak JA, Maynard DM, Markey SP. Xu M, et al. Among authors: geer ly. J Proteome Res. 2005 Mar-Apr;4(2):300-5. doi: 10.1021/pr049844y. J Proteome Res. 2005. PMID: 15822904

7

Automated annotation of chemical names in the literature with tunable accuracy.

Zhang JD, Geer LY, Bolton EE, Bryant SH. Zhang JD, et al. Among authors: geer ly. J Cheminform. 2011 Nov 22;3(1):52. doi: 10.1186/1758-2946-3-52. J Cheminform. 2011. PMID: 22107874 Free PMC article.

8

Target enhanced 2D similarity search by using explicit biological activity annotations and profiles.

Yu X, Geer LY, Han L, Bryant SH. Yu X, et al. Among authors: geer ly. J Cheminform. 2015 Nov 17;7:55. doi: 10.1186/s13321-015-0103-5. eCollection 2015. J Cheminform. 2015. PMID: 26583046 Free PMC article.

9

Automatic annotation of experimentally derived, evolutionarily conserved post-translational modifications onto multiple genomes.

Sridhara V, Marchler-Bauer A, Bryant SH, Geer LY. Sridhara V, et al. Among authors: geer ly. Database (Oxford). 2011 May 13;2011:bar019. doi: 10.1093/database/bar019. Print 2011. Database (Oxford). 2011. PMID: 21571812 Free PMC article.

10

CDART: protein homology by domain architecture.

Geer LY, Domrachev M, Lipman DJ, Bryant SH. Geer LY, et al. Genome Res. 2002 Oct;12(10):1619-23. doi: 10.1101/gr.278202. Genome Res. 2002. PMID: 12368255 Free PMC article.

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