van Helden J - Search Results

1

In silico identification of NF-kappaB-regulated genes in pancreatic beta-cells.

Naamane N, van Helden J, Eizirik DL. Naamane N, et al. Among authors: van helden j. BMC Bioinformatics. 2007 Feb 15;8:55. doi: 10.1186/1471-2105-8-55. BMC Bioinformatics. 2007. PMID: 17302974 Free PMC article.

2

Discrimination of yeast genes involved in methionine and phosphate metabolism on the basis of upstream motifs.

Gonze D, Pinloche S, Gascuel O, van Helden J. Gonze D, et al. Among authors: van helden j. Bioinformatics. 2005 Sep 1;21(17):3490-500. doi: 10.1093/bioinformatics/bti558. Epub 2005 Jul 5. Bioinformatics. 2005. PMID: 15998664

3

Combining pattern discovery and discriminant analysis to predict gene co-regulation.

Simonis N, Wodak SJ, Cohen GN, van Helden J. Simonis N, et al. Among authors: van helden j. Bioinformatics. 2004 Oct 12;20(15):2370-9. doi: 10.1093/bioinformatics/bth252. Epub 2004 Apr 8. Bioinformatics. 2004. PMID: 15073004

4

Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution.

Janky R, van Helden J. Janky R, et al. Among authors: van helden j. BMC Bioinformatics. 2008 Jan 23;9:37. doi: 10.1186/1471-2105-9-37. BMC Bioinformatics. 2008. PMID: 18215291 Free PMC article.

5

Unraveling networks of co-regulated genes on the sole basis of genome sequences.

Brohée S, Janky R, Abdel-Sater F, Vanderstocken G, André B, van Helden J. Brohée S, et al. Among authors: van helden j. Nucleic Acids Res. 2011 Aug;39(15):6340-58. doi: 10.1093/nar/gkr264. Epub 2011 May 13. Nucleic Acids Res. 2011. PMID: 21572103 Free PMC article.

6

Metrics for comparing regulatory sequences on the basis of pattern counts.

van Helden J. van Helden J. Bioinformatics. 2004 Feb 12;20(3):399-406. doi: 10.1093/bioinformatics/btg425. Epub 2004 Feb 5. Bioinformatics. 2004. PMID: 14764560

7

Pathway discovery in metabolic networks by subgraph extraction.

Faust K, Dupont P, Callut J, van Helden J. Faust K, et al. Among authors: van helden j. Bioinformatics. 2010 May 1;26(9):1211-8. doi: 10.1093/bioinformatics/btq105. Epub 2010 Mar 12. Bioinformatics. 2010. PMID: 20228128 Free PMC article.

8

Evaluation of clustering algorithms for protein-protein interaction networks.

Brohée S, van Helden J. Brohée S, et al. Among authors: van helden j. BMC Bioinformatics. 2006 Nov 6;7:488. doi: 10.1186/1471-2105-7-488. BMC Bioinformatics. 2006. PMID: 17087821 Free PMC article.

9

info-gibbs: a motif discovery algorithm that directly optimizes information content during sampling.

Defrance M, van Helden J. Defrance M, et al. Among authors: van helden j. Bioinformatics. 2009 Oct 15;25(20):2715-22. doi: 10.1093/bioinformatics/btp490. Epub 2009 Aug 18. Bioinformatics. 2009. PMID: 19689955

10

Clusters of conserved beta cell marker genes for assessment of beta cell phenotype.

Martens GA, Jiang L, Hellemans KH, Stangé G, Heimberg H, Nielsen FC, Sand O, Van Helden J, Van Lommel L, Schuit F, Gorus FK, Pipeleers DG. Martens GA, et al. Among authors: van helden j, van lommel l. PLoS One. 2011;6(9):e24134. doi: 10.1371/journal.pone.0024134. Epub 2011 Sep 2. PLoS One. 2011. PMID: 21912665 Free PMC article.

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