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Restriction landmark genome scanning identifies culture-induced DNA methylation instability in the human embryonic stem cell epigenome.
Allegrucci C, Wu YZ, Thurston A, Denning CN, Priddle H, Mummery CL, Ward-van Oostwaard D, Andrews PW, Stojkovic M, Smith N, Parkin T, Jones ME, Warren G, Yu L, Brena RM, Plass C, Young LE. Allegrucci C, et al. Among authors: yu l. Hum Mol Genet. 2007 May 15;16(10):1253-68. doi: 10.1093/hmg/ddm074. Epub 2007 Apr 4. Hum Mol Genet. 2007. PMID: 17409196
Restriction landmark genomic scanning (RLGS) spot identification by second generation virtual RLGS in multiple genomes with multiple enzyme combinations.
Smiraglia DJ, Kazhiyur-Mannar R, Oakes CC, Wu YZ, Liang P, Ansari T, Su J, Rush LJ, Smith LT, Yu L, Liu C, Dai Z, Chen SS, Wang SH, Costello J, Ioshikhes I, Dawson DW, Hong JS, Teitell MA, Szafranek A, Camoriano M, Song F, Elliott R, Held W, Trasler JM, Plass C, Wenger R. Smiraglia DJ, et al. Among authors: yu l. BMC Genomics. 2007 Nov 30;8:446. doi: 10.1186/1471-2164-8-446. BMC Genomics. 2007. PMID: 18053125 Free PMC article.
Aberrant CpG-island methylation has non-random and tumour-type-specific patterns.
Costello JF, Frühwald MC, Smiraglia DJ, Rush LJ, Robertson GP, Gao X, Wright FA, Feramisco JD, Peltomäki P, Lang JC, Schuller DE, Yu L, Bloomfield CD, Caligiuri MA, Yates A, Nishikawa R, Su Huang H, Petrelli NJ, Zhang X, O'Dorisio MS, Held WA, Cavenee WK, Plass C. Costello JF, et al. Among authors: yu l. Nat Genet. 2000 Feb;24(2):132-8. doi: 10.1038/72785. Nat Genet. 2000. PMID: 10655057
TSC-22 contributes to hematopoietic precursor cell proliferation and repopulation and is epigenetically silenced in large granular lymphocyte leukemia.
Yu J, Ershler M, Yu L, Wei M, Hackanson B, Yokohama A, Mitsui T, Liu C, Mao H, Liu S, Liu Z, Trotta R, Liu CG, Liu X, Huang K, Visser J, Marcucci G, Plass C, Belyavsky AV, Caligiuri MA. Yu J, et al. Among authors: yu l. Blood. 2009 May 28;113(22):5558-67. doi: 10.1182/blood-2009-02-205732. Epub 2009 Mar 27. Blood. 2009. PMID: 19329776 Free PMC article.
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