Bazykin GA - Search Results

1

Extensive parallelism in protein evolution.

Bazykin GA, Kondrashov FA, Brudno M, Poliakov A, Dubchak I, Kondrashov AS. Bazykin GA, et al. Biol Direct. 2007 Aug 16;2:20. doi: 10.1186/1745-6150-2-20. Biol Direct. 2007. PMID: 17705846 Free PMC article.

2

Positive selection at sites of multiple amino acid replacements since rat-mouse divergence.

Bazykin GA, Kondrashov FA, Ogurtsov AY, Sunyaev S, Kondrashov AS. Bazykin GA, et al. Nature. 2004 Jun 3;429(6991):558-62. doi: 10.1038/nature02601. Nature. 2004. PMID: 15175752

3

Rate of promoter class turn-over in yeast evolution.

Bazykin GA, Kondrashov AS. Bazykin GA, et al. BMC Evol Biol. 2006 Feb 10;6:14. doi: 10.1186/1471-2148-6-14. BMC Evol Biol. 2006. PMID: 16472383 Free PMC article.

4

Comparative genomics of transcriptional regulation in yeasts and its application to identification of a candidate alpha-isopropylmalate transporter.

Kovaleva GY, Bazykin GA, Brudno M, Gelfand MS. Kovaleva GY, et al. Among authors: bazykin ga. J Bioinform Comput Biol. 2006 Oct;4(5):981-98. doi: 10.1142/s0219720006002284. J Bioinform Comput Biol. 2006. PMID: 17099937

5

Bursts of nonsynonymous substitutions in HIV-1 evolution reveal instances of positive selection at conservative protein sites.

Bazykin GA, Dushoff J, Levin SA, Kondrashov AS. Bazykin GA, et al. Proc Natl Acad Sci U S A. 2006 Dec 19;103(51):19396-401. doi: 10.1073/pnas.0609484103. Epub 2006 Dec 12. Proc Natl Acad Sci U S A. 2006. PMID: 17164328 Free PMC article.

6

Polymorphism due to multiple amino acid substitutions at a codon site within Ciona savignyi.

Donmez N, Bazykin GA, Brudno M, Kondrashov AS. Donmez N, et al. Among authors: bazykin ga. Genetics. 2009 Feb;181(2):685-90. doi: 10.1534/genetics.108.097535. Epub 2008 Dec 15. Genetics. 2009. PMID: 19087959 Free PMC article.

7

Detecting past positive selection through ongoing negative selection.

Bazykin GA, Kondrashov AS. Bazykin GA, et al. Genome Biol Evol. 2011;3:1006-13. doi: 10.1093/gbe/evr086. Epub 2011 Aug 22. Genome Biol Evol. 2011. PMID: 21859804 Free PMC article.

8

Heterogeneity of the transition/transversion ratio in Drosophila and Hominidae genomes.

Seplyarskiy VB, Kharchenko P, Kondrashov AS, Bazykin GA. Seplyarskiy VB, et al. Among authors: bazykin ga. Mol Biol Evol. 2012 Aug;29(8):1943-55. doi: 10.1093/molbev/mss071. Epub 2012 Feb 15. Mol Biol Evol. 2012. PMID: 22337862

9

Insertions and deletions trigger adaptive walks in Drosophila proteins.

Leushkin EV, Bazykin GA, Kondrashov AS. Leushkin EV, et al. Among authors: bazykin ga. Proc Biol Sci. 2012 Aug 7;279(1740):3075-82. doi: 10.1098/rspb.2011.2571. Epub 2012 Mar 28. Proc Biol Sci. 2012. PMID: 22456880 Free PMC article.

10

Fitness conferred by replaced amino acids declines with time.

Naumenko SA, Kondrashov AS, Bazykin GA. Naumenko SA, et al. Among authors: bazykin ga. Biol Lett. 2012 Oct 23;8(5):825-8. doi: 10.1098/rsbl.2012.0356. Epub 2012 May 23. Biol Lett. 2012. PMID: 22628094 Free PMC article.

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