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The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools.
Klimek J, Eddes JS, Hohmann L, Jackson J, Peterson A, Letarte S, Gafken PR, Katz JE, Mallick P, Lee H, Schmidt A, Ossola R, Eng JK, Aebersold R, Martin DB. Klimek J, et al. Among authors: mallick p. J Proteome Res. 2008 Jan;7(1):96-103. doi: 10.1021/pr070244j. Epub 2007 Aug 21. J Proteome Res. 2008. PMID: 17711323 Free PMC article.
Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas.
King NL, Deutsch EW, Ranish JA, Nesvizhskii AI, Eddes JS, Mallick P, Eng J, Desiere F, Flory M, Martin DB, Kim B, Lee H, Raught B, Aebersold R. King NL, et al. Among authors: mallick p. Genome Biol. 2006;7(11):R106. doi: 10.1186/gb-2006-7-11-r106. Genome Biol. 2006. PMID: 17101051 Free PMC article.
Installation and use of LabKey Server for proteomics.
Eckels J, Hussey P, Nelson EK, Myers T, Rauch A, Bellew M, Connolly B, Law W, Eng JK, Katz J, McIntosh M, Mallick P, Igra M. Eckels J, et al. Among authors: mallick p. Curr Protoc Bioinformatics. 2011 Dec;Chapter 13:13.5.1-13.5.25. doi: 10.1002/0471250953.bi1305s36. Curr Protoc Bioinformatics. 2011. PMID: 22161569
Signal maps for mass spectrometry-based comparative proteomics.
Prakash A, Mallick P, Whiteaker J, Zhang H, Paulovich A, Flory M, Lee H, Aebersold R, Schwikowski B. Prakash A, et al. Among authors: mallick p. Mol Cell Proteomics. 2006 Mar;5(3):423-32. doi: 10.1074/mcp.M500133-MCP200. Epub 2005 Nov 3. Mol Cell Proteomics. 2006. PMID: 16269421 Free article.
The PeptideAtlas project.
Desiere F, Deutsch EW, King NL, Nesvizhskii AI, Mallick P, Eng J, Chen S, Eddes J, Loevenich SN, Aebersold R. Desiere F, et al. Among authors: mallick p. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D655-8. doi: 10.1093/nar/gkj040. Nucleic Acids Res. 2006. PMID: 16381952 Free PMC article.
Peptide identification from mixture tandem mass spectra.
Wang J, Pérez-Santiago J, Katz JE, Mallick P, Bandeira N. Wang J, et al. Among authors: mallick p. Mol Cell Proteomics. 2010 Jul;9(7):1476-85. doi: 10.1074/mcp.M000136-MCP201. Epub 2010 Mar 27. Mol Cell Proteomics. 2010. PMID: 20348588 Free PMC article.
211 results