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Page 1
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures.
Stark A, Lin MF, Kheradpour P, Pedersen JS, Parts L, Carlson JW, Crosby MA, Rasmussen MD, Roy S, Deoras AN, Ruby JG, Brennecke J; Harvard FlyBase curators; Berkeley Drosophila Genome Project; Hodges E, Hinrichs AS, Caspi A, Paten B, Park SW, Han MV, Maeder ML, Polansky BJ, Robson BE, Aerts S, van Helden J, Hassan B, Gilbert DG, Eastman DA, Rice M, Weir M, Hahn MW, Park Y, Dewey CN, Pachter L, Kent WJ, Haussler D, Lai EC, Bartel DP, Hannon GJ, Kaufman TC, Eisen MB, Clark AG, Smith D, Celniker SE, Gelbart WM, Kellis M. Stark A, et al. Among authors: crosby ma. Nature. 2007 Nov 8;450(7167):219-32. doi: 10.1038/nature06340. Nature. 2007. PMID: 17994088 Free PMC article.
FlyBase: a Drosophila database. The FlyBase consortium.
Gelbart WM, Crosby M, Matthews B, Rindone WP, Chillemi J, Russo Twombly S, Emmert D, Ashburner M, Drysdale RA, Whitfield E, Millburn GH, de Grey A, Kaufman T, Matthews K, Gilbert D, Strelets V, Tolstoshev C. Gelbart WM, et al. Nucleic Acids Res. 1997 Jan 1;25(1):63-6. doi: 10.1093/nar/25.1.63. Nucleic Acids Res. 1997. PMID: 9045212 Free PMC article.
Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.
Misra S, Crosby MA, Mungall CJ, Matthews BB, Campbell KS, Hradecky P, Huang Y, Kaminker JS, Millburn GH, Prochnik SE, Smith CD, Tupy JL, Whitfied EJ, Bayraktaroglu L, Berman BP, Bettencourt BR, Celniker SE, de Grey AD, Drysdale RA, Harris NL, Richter J, Russo S, Schroeder AJ, Shu SQ, Stapleton M, Yamada C, Ashburner M, Gelbart WM, Rubin GM, Lewis SE. Misra S, et al. Among authors: crosby ma. Genome Biol. 2002;3(12):RESEARCH0083. doi: 10.1186/gb-2002-3-12-research0083. Epub 2002 Dec 31. Genome Biol. 2002. PMID: 12537572 Free PMC article. Review.
FlyBase: genomes by the dozen.
Crosby MA, Goodman JL, Strelets VB, Zhang P, Gelbart WM; FlyBase Consortium. Crosby MA, et al. Nucleic Acids Res. 2007 Jan;35(Database issue):D486-91. doi: 10.1093/nar/gkl827. Epub 2006 Nov 11. Nucleic Acids Res. 2007. PMID: 17099233 Free PMC article.
Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes.
Lin MF, Carlson JW, Crosby MA, Matthews BB, Yu C, Park S, Wan KH, Schroeder AJ, Gramates LS, St Pierre SE, Roark M, Wiley KL Jr, Kulathinal RJ, Zhang P, Myrick KV, Antone JV, Celniker SE, Gelbart WM, Kellis M. Lin MF, et al. Among authors: crosby ma. Genome Res. 2007 Dec;17(12):1823-36. doi: 10.1101/gr.6679507. Epub 2007 Nov 7. Genome Res. 2007. PMID: 17989253 Free PMC article.
FlyBase: enhancing Drosophila Gene Ontology annotations.
Tweedie S, Ashburner M, Falls K, Leyland P, McQuilton P, Marygold S, Millburn G, Osumi-Sutherland D, Schroeder A, Seal R, Zhang H; FlyBase Consortium. Tweedie S, et al. Nucleic Acids Res. 2009 Jan;37(Database issue):D555-9. doi: 10.1093/nar/gkn788. Epub 2008 Oct 23. Nucleic Acids Res. 2009. PMID: 18948289 Free PMC article.
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