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Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum.
Mourier T, Carret C, Kyes S, Christodoulou Z, Gardner PP, Jeffares DC, Pinches R, Barrell B, Berriman M, Griffiths-Jones S, Ivens A, Newbold C, Pain A. Mourier T, et al. Among authors: gardner pp. Genome Res. 2008 Feb;18(2):281-92. doi: 10.1101/gr.6836108. Epub 2007 Dec 20. Genome Res. 2008. PMID: 18096748 Free PMC article.
Long- and short-term selective forces on malaria parasite genomes.
Nygaard S, Braunstein A, Malsen G, Van Dongen S, Gardner PP, Krogh A, Otto TD, Pain A, Berriman M, McAuliffe J, Dermitzakis ET, Jeffares DC. Nygaard S, et al. Among authors: gardner pp. PLoS Genet. 2010 Sep 9;6(9):e1001099. doi: 10.1371/journal.pgen.1001099. PLoS Genet. 2010. PMID: 20838588 Free PMC article.
Conservation and losses of non-coding RNAs in avian genomes.
Gardner PP, Fasold M, Burge SW, Ninova M, Hertel J, Kehr S, Steeves TE, Griffiths-Jones S, Stadler PF. Gardner PP, et al. PLoS One. 2015 Mar 30;10(3):e0121797. doi: 10.1371/journal.pone.0121797. eCollection 2015. PLoS One. 2015. PMID: 25822729 Free PMC article.
Rfam: Wikipedia, clans and the "decimal" release.
Gardner PP, Daub J, Tate J, Moore BL, Osuch IH, Griffiths-Jones S, Finn RD, Nawrocki EP, Kolbe DL, Eddy SR, Bateman A. Gardner PP, et al. Nucleic Acids Res. 2011 Jan;39(Database issue):D141-5. doi: 10.1093/nar/gkq1129. Epub 2010 Nov 9. Nucleic Acids Res. 2011. PMID: 21062808 Free PMC article.
Rfam: updates to the RNA families database.
Gardner PP, Daub J, Tate JG, Nawrocki EP, Kolbe DL, Lindgreen S, Wilkinson AC, Finn RD, Griffiths-Jones S, Eddy SR, Bateman A. Gardner PP, et al. Nucleic Acids Res. 2009 Jan;37(Database issue):D136-40. doi: 10.1093/nar/gkn766. Epub 2008 Oct 25. Nucleic Acids Res. 2009. PMID: 18953034 Free PMC article.
The RNA WikiProject: community annotation of RNA families.
Daub J, Gardner PP, Tate J, Ramsköld D, Manske M, Scott WG, Weinberg Z, Griffiths-Jones S, Bateman A. Daub J, et al. Among authors: gardner pp. RNA. 2008 Dec;14(12):2462-4. doi: 10.1261/rna.1200508. Epub 2008 Oct 22. RNA. 2008. PMID: 18945806 Free PMC article.
80 results