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BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS and TSEBRA.
Gabriel L, Brůna T, Hoff KJ, Ebel M, Lomsadze A, Borodovsky M, Stanke M. Gabriel L, et al. Among authors: stanke m. bioRxiv [Preprint]. 2024 Feb 29:2023.06.10.544449. doi: 10.1101/2023.06.10.544449. bioRxiv. 2024. Update in: Genome Res. 2024 Jun 25;34(5):769-777. doi: 10.1101/gr.278090.123 PMID: 37398387 Free PMC article. Updated. Preprint.
The UCSC genome browser database: update 2007.
Kuhn RM, Karolchik D, Zweig AS, Trumbower H, Thomas DJ, Thakkapallayil A, Sugnet CW, Stanke M, Smith KE, Siepel A, Rosenbloom KR, Rhead B, Raney BJ, Pohl A, Pedersen JS, Hsu F, Hinrichs AS, Harte RA, Diekhans M, Clawson H, Bejerano G, Barber GP, Baertsch R, Haussler D, Kent WJ. Kuhn RM, et al. Among authors: stanke m. Nucleic Acids Res. 2007 Jan;35(Database issue):D668-73. doi: 10.1093/nar/gkl928. Epub 2006 Nov 16. Nucleic Acids Res. 2007. PMID: 17142222 Free PMC article.
The UCSC Genome Browser Database: 2008 update.
Karolchik D, Kuhn RM, Baertsch R, Barber GP, Clawson H, Diekhans M, Giardine B, Harte RA, Hinrichs AS, Hsu F, Kober KM, Miller W, Pedersen JS, Pohl A, Raney BJ, Rhead B, Rosenbloom KR, Smith KE, Stanke M, Thakkapallayil A, Trumbower H, Wang T, Zweig AS, Haussler D, Kent WJ. Karolchik D, et al. Among authors: stanke m. Nucleic Acids Res. 2008 Jan;36(Database issue):D773-9. doi: 10.1093/nar/gkm966. Epub 2007 Dec 17. Nucleic Acids Res. 2008. PMID: 18086701 Free PMC article.
Simultaneous gene finding in multiple genomes.
König S, Romoth LW, Gerischer L, Stanke M. König S, et al. Among authors: stanke m. Bioinformatics. 2016 Nov 15;32(22):3388-3395. doi: 10.1093/bioinformatics/btw494. Epub 2016 Jul 27. Bioinformatics. 2016. PMID: 27466621 Free PMC article.
119 results