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HistoPlexer: Histopathology-based Protein Multiplex Generation using Deep Learning.
Andani S, Chen B, Ficek-Pascual J, Heinke S, Casanova R, Hild B, Sobottka B, Bodenmiller B; Tumor Profiler Consortium; Koelzer VH, Rätsch G. Andani S, et al. Among authors: casanova r. medRxiv [Preprint]. 2024 Dec 7:2024.01.26.24301803. doi: 10.1101/2024.01.26.24301803. medRxiv. 2024. PMID: 39677425 Free PMC article. Preprint.
Proteomic analysis of APOEε4 carriers implicates lipid metabolism, complement and lymphocyte signaling in cognitive resilience.
Walker KA, An Y, Moghekar A, Moaddel R, Duggan MR, Peng Z, Tian Q, Pilling LC, Drouin SM, Espeland MA, Rapp SR, Hayden KM, Shadyab AH, Casanova R, Thambisetty M, Rapp PR, Kapogiannis D, Ferrucci L, Resnick SM. Walker KA, et al. Among authors: casanova r. Mol Neurodegener. 2024 Oct 31;19(1):81. doi: 10.1186/s13024-024-00772-2. Mol Neurodegener. 2024. PMID: 39482741 Free PMC article.
Single-cell landscape of innate and acquired drug resistance in acute myeloid leukemia.
Wegmann R, Bonilla X, Casanova R, Chevrier S, Coelho R, Esposito C, Ficek-Pascual J, Goetze S, Gut G, Jacob F, Jacobs A, Kuipers J, Lischetti U, Mena J, Milani ES, Prummer M, Del Castillo JS, Singer F, Sivapatham S, Toussaint NC, Vilinovszki O, Wildschut MHE, Thavayogarajah T, Malani D; TumorProfiler Consortium; Aebersold R, Bacac M, Beerenwinkel N, Beisel C, Bodenmiller B, Heinzelmann-Schwarz V, Koelzer VH, Levesque MP, Moch H, Pelkmans L, Rätsch G, Tolnay M, Wicki A, Wollscheid B, Manz MG, Snijder B, Theocharides APA. Wegmann R, et al. Among authors: casanova r. Nat Commun. 2024 Oct 30;15(1):9402. doi: 10.1038/s41467-024-53535-4. Nat Commun. 2024. PMID: 39477946 Free PMC article.
AESurv: autoencoder survival analysis for accurate early prediction of coronary heart disease.
Shen Y, Domingo-Relloso A, Kupsco A, Kioumourtzoglou MA, Tellez-Plaza M, Umans JG, Fretts AM, Zhang Y, Schnatz PF, Casanova R, Martin LW, Horvath S, Manson JE, Cole SA, Wu H, Whitsel EA, Baccarelli AA, Navas-Acien A, Gao F. Shen Y, et al. Among authors: casanova r. Brief Bioinform. 2024 Sep 23;25(6):bbae479. doi: 10.1093/bib/bbae479. Brief Bioinform. 2024. PMID: 39323093 Free PMC article.
Probabilistic pathway-based multimodal factor analysis.
Immer A, Stark SG, Jacob F, Bonilla X, Thomas T, Kahles A, Goetze S, Milani ES, Wollscheid B; Tumor Profiler Consortium; Rätsch G, Lehmann KV. Immer A, et al. Bioinformatics. 2024 Jun 28;40(Suppl 1):i189-i198. doi: 10.1093/bioinformatics/btae216. Bioinformatics. 2024. PMID: 38940152 Free PMC article.
254 results