Via A - Search Results

1

FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures.

Ausiello G, Gherardini PF, Marcatili P, Tramontano A, Via A, Helmer-Citterich M. Ausiello G, et al. Among authors: via a. BMC Bioinformatics. 2008 Mar 26;9 Suppl 2(Suppl 2):S2. doi: 10.1186/1471-2105-9-S2-S2. BMC Bioinformatics. 2008. PMID: 18387204 Free PMC article.

2

A structural study for the optimisation of functional motifs encoded in protein sequences.

Via A, Helmer-Citterich M. Via A, et al. BMC Bioinformatics. 2004 Apr 30;5:50. doi: 10.1186/1471-2105-5-50. BMC Bioinformatics. 2004. PMID: 15119965 Free PMC article.

3

Seq2Struct: a resource for establishing sequence-structure links.

Via A, Zanzoni A, Helmer-Citterich M. Via A, et al. Bioinformatics. 2005 Feb 15;21(4):551-3. doi: 10.1093/bioinformatics/bti049. Epub 2004 Sep 28. Bioinformatics. 2005. PMID: 15454411

4

pdbFun: mass selection and fast comparison of annotated PDB residues.

Ausiello G, Zanzoni A, Peluso D, Via A, Helmer-Citterich M. Ausiello G, et al. Among authors: via a. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W133-7. doi: 10.1093/nar/gki499. Nucleic Acids Res. 2005. PMID: 15980442 Free PMC article.

5

A neural strategy for the inference of SH3 domain-peptide interaction specificity.

Ferraro E, Via A, Ausiello G, Helmer-Citterich M. Ferraro E, et al. Among authors: via a. BMC Bioinformatics. 2005 Dec 1;6 Suppl 4(Suppl 4):S13. doi: 10.1186/1471-2105-6-S4-S13. BMC Bioinformatics. 2005. PMID: 16351739 Free PMC article.

6

Query3d: a new method for high-throughput analysis of functional residues in protein structures.

Ausiello G, Via A, Helmer-Citterich M. Ausiello G, et al. Among authors: via a. BMC Bioinformatics. 2005 Dec 1;6 Suppl 4(Suppl 4):S5. doi: 10.1186/1471-2105-6-S4-S5. BMC Bioinformatics. 2005. PMID: 16351754 Free PMC article.

7

False occurrences of functional motifs in protein sequences highlight evolutionary constraints.

Via A, Gherardini PF, Ferraro E, Ausiello G, Scalia Tomba G, Helmer-Citterich M. Via A, et al. BMC Bioinformatics. 2007 Mar 1;8:68. doi: 10.1186/1471-2105-8-68. BMC Bioinformatics. 2007. PMID: 17331242 Free PMC article.

8

Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites.

Ausiello G, Peluso D, Via A, Helmer-Citterich M. Ausiello G, et al. Among authors: via a. BMC Bioinformatics. 2007 Mar 8;8 Suppl 1(Suppl 1):S24. doi: 10.1186/1471-2105-8-S1-S24. BMC Bioinformatics. 2007. PMID: 17430569 Free PMC article.

9

SH3-Hunter: discovery of SH3 domain interaction sites in proteins.

Ferraro E, Peluso D, Via A, Ausiello G, Helmer-Citterich M. Ferraro E, et al. Among authors: via a. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W451-4. doi: 10.1093/nar/gkm296. Epub 2007 May 7. Nucleic Acids Res. 2007. PMID: 17485474 Free PMC article.

10

3dLOGO: a web server for the identification, analysis and use of conserved protein substructures.

Via A, Peluso D, Gherardini PF, de Rinaldis E, Colombo T, Ausiello G, Helmer-Citterich M. Via A, et al. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W416-9. doi: 10.1093/nar/gkm228. Epub 2007 May 8. Nucleic Acids Res. 2007. PMID: 17488847 Free PMC article.

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