Kauffman S - Search Results

1

Critical dynamics in genetic regulatory networks: examples from four kingdoms.

Balleza E, Alvarez-Buylla ER, Chaos A, Kauffman S, Shmulevich I, Aldana M. Balleza E, et al. Among authors: kauffman s. PLoS One. 2008 Jun 18;3(6):e2456. doi: 10.1371/journal.pone.0002456. PLoS One. 2008. PMID: 18560561 Free PMC article.

2

Robustness and evolvability in genetic regulatory networks.

Aldana M, Balleza E, Kauffman S, Resendiz O. Aldana M, et al. Among authors: kauffman s. J Theor Biol. 2007 Apr 7;245(3):433-48. doi: 10.1016/j.jtbi.2006.10.027. Epub 2006 Nov 1. J Theor Biol. 2007. PMID: 17188715

3

Eukaryotic cells are dynamically ordered or critical but not chaotic.

Shmulevich I, Kauffman SA, Aldana M. Shmulevich I, et al. Proc Natl Acad Sci U S A. 2005 Sep 20;102(38):13439-44. doi: 10.1073/pnas.0506771102. Epub 2005 Sep 9. Proc Natl Acad Sci U S A. 2005. PMID: 16155121 Free PMC article.

4

Critical networks exhibit maximal information diversity in structure-dynamics relationships.

Nykter M, Price ND, Larjo A, Aho T, Kauffman SA, Yli-Harja O, Shmulevich I. Nykter M, et al. Phys Rev Lett. 2008 Feb 8;100(5):058702. doi: 10.1103/PhysRevLett.100.058702. Epub 2008 Feb 4. Phys Rev Lett. 2008. PMID: 18352443

5

Activities and sensitivities in boolean network models.

Shmulevich I, Kauffman SA. Shmulevich I, et al. Phys Rev Lett. 2004 Jul 23;93(4):048701. doi: 10.1103/PhysRevLett.93.048701. Epub 2004 Jul 22. Phys Rev Lett. 2004. PMID: 15323803 Free PMC article.

6

Gene expression dynamics in the macrophage exhibit criticality.

Nykter M, Price ND, Aldana M, Ramsey SA, Kauffman SA, Hood LE, Yli-Harja O, Shmulevich I. Nykter M, et al. Proc Natl Acad Sci U S A. 2008 Feb 12;105(6):1897-900. doi: 10.1073/pnas.0711525105. Epub 2008 Feb 4. Proc Natl Acad Sci U S A. 2008. PMID: 18250330 Free PMC article.

7

Noise in a Small Genetic Circuit that Undergoes Bifurcation.

Toulouse T, Ao P, Shmulevich I, Kauffman S. Toulouse T, et al. Among authors: kauffman s. Complexity. 2005;11(1):45-51. doi: 10.1002/cplx.20099. Complexity. 2005. PMID: 16670776 Free PMC article.

8

Using cell fate attractors to uncover transcriptional regulation of HL60 neutrophil differentiation.

Huang AC, Hu L, Kauffman SA, Zhang W, Shmulevich I. Huang AC, et al. BMC Syst Biol. 2009 Feb 18;3:20. doi: 10.1186/1752-0509-3-20. BMC Syst Biol. 2009. PMID: 19222862 Free PMC article.

9

Gene-pair expression signatures reveal lineage control.

Heinäniemi M, Nykter M, Kramer R, Wienecke-Baldacchino A, Sinkkonen L, Zhou JX, Kreisberg R, Kauffman SA, Huang S, Shmulevich I. Heinäniemi M, et al. Among authors: kauffman sa. Nat Methods. 2013 Jun;10(6):577-83. doi: 10.1038/nmeth.2445. Epub 2013 Apr 21. Nat Methods. 2013. PMID: 23603899 Free PMC article.

10

Studying genetic regulatory networks at the molecular level: delayed reaction stochastic models.

Zhu R, Ribeiro AS, Salahub D, Kauffman SA. Zhu R, et al. Among authors: kauffman sa. J Theor Biol. 2007 Jun 21;246(4):725-45. doi: 10.1016/j.jtbi.2007.01.021. Epub 2007 Feb 6. J Theor Biol. 2007. PMID: 17350653

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