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A database of mass spectrometric assays for the yeast proteome.
Picotti P, Lam H, Campbell D, Deutsch EW, Mirzaei H, Ranish J, Domon B, Aebersold R. Picotti P, et al. Among authors: campbell d. Nat Methods. 2008 Nov;5(11):913-4. doi: 10.1038/nmeth1108-913. Nat Methods. 2008. PMID: 18974732 Free PMC article. No abstract available.
A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis.
Picotti P, Clément-Ziza M, Lam H, Campbell DS, Schmidt A, Deutsch EW, Röst H, Sun Z, Rinner O, Reiter L, Shen Q, Michaelson JJ, Frei A, Alberti S, Kusebauch U, Wollscheid B, Moritz RL, Beyer A, Aebersold R. Picotti P, et al. Nature. 2013 Feb 14;494(7436):266-70. doi: 10.1038/nature11835. Epub 2013 Jan 20. Nature. 2013. PMID: 23334424 Free PMC article.
PhosphoPep--a database of protein phosphorylation sites in model organisms.
Bodenmiller B, Campbell D, Gerrits B, Lam H, Jovanovic M, Picotti P, Schlapbach R, Aebersold R. Bodenmiller B, et al. Among authors: campbell d. Nat Biotechnol. 2008 Dec;26(12):1339-40. doi: 10.1038/nbt1208-1339. Nat Biotechnol. 2008. PMID: 19060867 Free PMC article. No abstract available.
A repository of assays to quantify 10,000 human proteins by SWATH-MS.
Rosenberger G, Koh CC, Guo T, Röst HL, Kouvonen P, Collins BC, Heusel M, Liu Y, Caron E, Vichalkovski A, Faini M, Schubert OT, Faridi P, Ebhardt HA, Matondo M, Lam H, Bader SL, Campbell DS, Deutsch EW, Moritz RL, Tate S, Aebersold R. Rosenberger G, et al. Sci Data. 2014 Sep 16;1:140031. doi: 10.1038/sdata.2014.31. eCollection 2014. Sci Data. 2014. PMID: 25977788 Free PMC article.
Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome.
Kusebauch U, Campbell DS, Deutsch EW, Chu CS, Spicer DA, Brusniak MY, Slagel J, Sun Z, Stevens J, Grimes B, Shteynberg D, Hoopmann MR, Blattmann P, Ratushny AV, Rinner O, Picotti P, Carapito C, Huang CY, Kapousouz M, Lam H, Tran T, Demir E, Aitchison JD, Sander C, Hood L, Aebersold R, Moritz RL. Kusebauch U, et al. Among authors: campbell ds. Cell. 2016 Jul 28;166(3):766-778. doi: 10.1016/j.cell.2016.06.041. Epub 2016 Jul 21. Cell. 2016. PMID: 27453469 Free PMC article.
A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas.
Farrah T, Deutsch EW, Omenn GS, Campbell DS, Sun Z, Bletz JA, Mallick P, Katz JE, Malmström J, Ossola R, Watts JD, Lin B, Zhang H, Moritz RL, Aebersold R. Farrah T, et al. Among authors: campbell ds. Mol Cell Proteomics. 2011 Sep;10(9):M110.006353. doi: 10.1074/mcp.M110.006353. Epub 2011 Jun 1. Mol Cell Proteomics. 2011. PMID: 21632744 Free PMC article.
Flexible and Fast Mapping of Peptides to a Proteome with ProteoMapper.
Mendoza L, Deutsch EW, Sun Z, Campbell DS, Shteynberg DD, Moritz RL. Mendoza L, et al. Among authors: campbell ds. J Proteome Res. 2018 Dec 7;17(12):4337-4344. doi: 10.1021/acs.jproteome.8b00544. Epub 2018 Sep 28. J Proteome Res. 2018. PMID: 30230343 Free PMC article.
ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry.
Brusniak MY, Kwok ST, Christiansen M, Campbell D, Reiter L, Picotti P, Kusebauch U, Ramos H, Deutsch EW, Chen J, Moritz RL, Aebersold R. Brusniak MY, et al. Among authors: campbell d. BMC Bioinformatics. 2011 Mar 18;12:78. doi: 10.1186/1471-2105-12-78. BMC Bioinformatics. 2011. PMID: 21414234 Free PMC article.
5,356 results