Kotnik M - Search Results

1

Novel naphthalene-N-sulfonyl-D-glutamic acid derivatives as inhibitors of MurD, a key peptidoglycan biosynthesis enzyme.

Humljan J, Kotnik M, Contreras-Martel C, Blanot D, Urleb U, Dessen A, Solmajer T, Gobec S. Humljan J, et al. Among authors: kotnik m. J Med Chem. 2008 Dec 11;51(23):7486-94. doi: 10.1021/jm800762u. J Med Chem. 2008. PMID: 19007109

2

Structural and functional characterization of enantiomeric glutamic acid derivatives as potential transition state analogue inhibitors of MurD ligase.

Kotnik M, Humljan J, Contreras-Martel C, Oblak M, Kristan K, Hervé M, Blanot D, Urleb U, Gobec S, Dessen A, Solmajer T. Kotnik M, et al. J Mol Biol. 2007 Jun 29;370(1):107-15. doi: 10.1016/j.jmb.2007.04.048. Epub 2007 May 4. J Mol Biol. 2007. PMID: 17507028

3

Discovery and development of ATPase inhibitors of DNA gyrase as antibacterial agents.

Oblak M, Kotnik M, Solmajer T. Oblak M, et al. Among authors: kotnik m. Curr Med Chem. 2007;14(19):2033-47. doi: 10.2174/092986707781368414. Curr Med Chem. 2007. PMID: 17691945 Review.

4

New high-throughput fluorimetric assay for discovering inhibitors of UDP-N-acetylmuramyl-L-alanine: D-glutamate (MurD) ligase.

Kristan K, Kotnik M, Oblak M, Urleb U. Kristan K, et al. Among authors: kotnik m. J Biomol Screen. 2009 Apr;14(4):412-8. doi: 10.1177/1087057109332597. J Biomol Screen. 2009. PMID: 19403924

5

Crystallographic Study of Peptidoglycan Biosynthesis Enzyme MurD: Domain Movement Revisited.

Šink R, Kotnik M, Zega A, Barreteau H, Gobec S, Blanot D, Dessen A, Contreras-Martel C. Šink R, et al. Among authors: kotnik m. PLoS One. 2016 Mar 31;11(3):e0152075. doi: 10.1371/journal.pone.0152075. eCollection 2016. PLoS One. 2016. PMID: 27031227 Free PMC article.

6

Flavonoids and cinnamic acid esters as inhibitors of fungal 17beta-hydroxysteroid dehydrogenase: a synthesis, QSAR and modelling study.

Sova M, Perdih A, Kotnik M, Kristan K, Rizner TL, Solmajer T, Gobec S. Sova M, et al. Among authors: kotnik m. Bioorg Med Chem. 2006 Nov 15;14(22):7404-18. doi: 10.1016/j.bmc.2006.07.027. Epub 2006 Aug 7. Bioorg Med Chem. 2006. PMID: 16891119

7

Targeted molecular dynamics simulation studies of binding and conformational changes in E. coli MurD.

Perdih A, Kotnik M, Hodoscek M, Solmajer T. Perdih A, et al. Among authors: kotnik m. Proteins. 2007 Jul 1;68(1):243-54. doi: 10.1002/prot.21374. Proteins. 2007. PMID: 17427948

8

Comparison of 3 cytotoxicity screening assays and their application to the selection of novel antibacterial hits.

Peternel L, Kotnik M, Prezelj A, Urleb U. Peternel L, et al. Among authors: kotnik m. J Biomol Screen. 2009 Feb;14(2):142-50. doi: 10.1177/1087057108329452. Epub 2009 Feb 4. J Biomol Screen. 2009. PMID: 19196697

9

Enzyme binding selectivity prediction: alpha-thrombin vs trypsin inhibition.

Mlinsek G, Novic M, Kotnik M, Solmajer T. Mlinsek G, et al. Among authors: kotnik m. J Chem Inf Comput Sci. 2004 Sep-Oct;44(5):1872-82. doi: 10.1021/ci0401017. J Chem Inf Comput Sci. 2004. PMID: 15446847

10

PBP active site flexibility as the key mechanism for beta-lactam resistance in pneumococci.

Contreras-Martel C, Dahout-Gonzalez C, Martins Ados S, Kotnik M, Dessen A. Contreras-Martel C, et al. Among authors: kotnik m. J Mol Biol. 2009 Apr 10;387(4):899-909. doi: 10.1016/j.jmb.2009.02.024. Epub 2009 Feb 20. J Mol Biol. 2009. PMID: 19233207

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