Matsumoto S - Search Results

1

Solution structure of the variable-type domain of the receptor for advanced glycation end products: new insight into AGE-RAGE interaction.

Matsumoto S, Yoshida T, Murata H, Harada S, Fujita N, Nakamura S, Yamamoto Y, Watanabe T, Yonekura H, Yamamoto H, Ohkubo T, Kobayashi Y. Matsumoto S, et al. Biochemistry. 2008 Nov 25;47(47):12299-311. doi: 10.1021/bi800910v. Biochemistry. 2008. PMID: 19032093

2

Current status of the development of Ras inhibitors.

Shima F, Matsumoto S, Yoshikawa Y, Kawamura T, Isa M, Kataoka T. Shima F, et al. Among authors: matsumoto s. J Biochem. 2015 Aug;158(2):91-9. doi: 10.1093/jb/mvv060. Epub 2015 Jun 22. J Biochem. 2015. PMID: 26100833 Review.

3

Molecular Basis for Allosteric Inhibition of GTP-Bound H-Ras Protein by a Small-Molecule Compound Carrying a Naphthalene Ring.

Matsumoto S, Hiraga T, Hayashi Y, Yoshikawa Y, Tsuda C, Araki M, Neya M, Shima F, Kataoka T. Matsumoto S, et al. Biochemistry. 2018 Sep 11;57(36):5350-5358. doi: 10.1021/acs.biochem.8b00680. Epub 2018 Aug 30. Biochemistry. 2018. PMID: 30141910

4

Structural basis for intramolecular interaction of post-translationally modified H-Ras•GTP prepared by protein ligation.

Ke H, Matsumoto S, Murashima Y, Taniguchi-Tamura H, Miyamoto R, Yoshikawa Y, Tsuda C, Kumasaka T, Mizohata E, Edamatsu H, Kataoka T. Ke H, et al. Among authors: matsumoto s. FEBS Lett. 2017 Aug;591(16):2470-2481. doi: 10.1002/1873-3468.12759. Epub 2017 Aug 2. FEBS Lett. 2017. PMID: 28730604 Free article.

5

Molecular Dynamics Unveils Multiple-Site Binding of Inhibitors with Reduced Activity on the Surface of Dihydrofolate Reductase.

Araki M, Ekimoto T, Takemura K, Matsumoto S, Tamura Y, Kokubo H, Bekker GJ, Yamane T, Isaka Y, Sagae Y, Kamiya N, Ikeguchi M, Okuno Y. Araki M, et al. Among authors: matsumoto s. J Am Chem Soc. 2024 Oct 23;146(42):28685-28695. doi: 10.1021/jacs.4c04648. Epub 2024 Oct 12. J Am Chem Soc. 2024. PMID: 39394997

6

Synergistic involvement of the NZF domains of the LUBAC accessory subunits HOIL-1L and SHARPIN in the regulation of LUBAC function.

Toda Y, Fujita H, Mino K, Koyama T, Matsuoka S, Kaizuka T, Agawa M, Matsumoto S, Idei A, Nishikori M, Okuno Y, Osada H, Yoshida M, Takaori-Kondo A, Iwai K. Toda Y, et al. Among authors: matsumoto s. Cell Death Dis. 2024 Nov 11;15(11):813. doi: 10.1038/s41419-024-07199-z. Cell Death Dis. 2024. PMID: 39528476 Free PMC article.

7

Exploring ligand binding pathways on proteins using hypersound-accelerated molecular dynamics.

Araki M, Matsumoto S, Bekker GJ, Isaka Y, Sagae Y, Kamiya N, Okuno Y. Araki M, et al. Among authors: matsumoto s. Nat Commun. 2021 May 14;12(1):2793. doi: 10.1038/s41467-021-23157-1. Nat Commun. 2021. PMID: 33990583 Free PMC article.

8

In silico discovery of small-molecule Ras inhibitors that display antitumor activity by blocking the Ras-effector interaction.

Shima F, Yoshikawa Y, Ye M, Araki M, Matsumoto S, Liao J, Hu L, Sugimoto T, Ijiri Y, Takeda A, Nishiyama Y, Sato C, Muraoka S, Tamura A, Osoda T, Tsuda K, Miyakawa T, Fukunishi H, Shimada J, Kumasaka T, Yamamoto M, Kataoka T. Shima F, et al. Among authors: matsumoto s. Proc Natl Acad Sci U S A. 2013 May 14;110(20):8182-7. doi: 10.1073/pnas.1217730110. Epub 2013 Apr 29. Proc Natl Acad Sci U S A. 2013. PMID: 23630290 Free PMC article.

9

Structure-Based de Novo Molecular Generator Combined with Artificial Intelligence and Docking Simulations.

Ma B, Terayama K, Matsumoto S, Isaka Y, Sasakura Y, Iwata H, Araki M, Okuno Y. Ma B, et al. Among authors: matsumoto s. J Chem Inf Model. 2021 Jul 26;61(7):3304-3313. doi: 10.1021/acs.jcim.1c00679. Epub 2021 Jul 9. J Chem Inf Model. 2021. PMID: 34242036

10

Integrated approach to functional analysis of an ERBB2 variant of unknown significance detected by a cancer gene panel test.

Harada Y, Sato A, Araki M, Matsumoto S, Isaka Y, Sagae Y, Abe T, Aoyagi Y, Sueoka E, Okuno Y, Kimura S, Sueoka-Aragane N. Harada Y, et al. Among authors: matsumoto s. Cell Oncol (Dordr). 2022 Feb;45(1):121-134. doi: 10.1007/s13402-021-00656-3. Epub 2022 Jan 8. Cell Oncol (Dordr). 2022. PMID: 34997908 Free PMC article.

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