Chen R - Search Results

1

FitSNPs: highly differentially expressed genes are more likely to have variants associated with disease.

Chen R, Morgan AA, Dudley J, Deshpande T, Li L, Kodama K, Chiang AP, Butte AJ. Chen R, et al. Genome Biol. 2008;9(12):R170. doi: 10.1186/gb-2008-9-12-r170. Epub 2008 Dec 5. Genome Biol. 2008. PMID: 19061490 Free PMC article.

2

Finding disease-related genomic experiments within an international repository: first steps in translational bioinformatics.

Butte AJ, Chen R. Butte AJ, et al. Among authors: chen r. AMIA Annu Symp Proc. 2006;2006:106-10. AMIA Annu Symp Proc. 2006. PMID: 17238312 Free PMC article.

3

Methodologies for extracting functional pharmacogenomic experiments from international repository.

Lin YA, Chiang A, Lin R, Yao P, Chen R, Butte AJ. Lin YA, et al. Among authors: chen r. AMIA Annu Symp Proc. 2007 Oct 11;2007:463-7. AMIA Annu Symp Proc. 2007. PMID: 18693879 Free PMC article.

4

GeneChaser: identifying all biological and clinical conditions in which genes of interest are differentially expressed.

Chen R, Mallelwar R, Thosar A, Venkatasubrahmanyam S, Butte AJ. Chen R, et al. BMC Bioinformatics. 2008 Dec 18;9:548. doi: 10.1186/1471-2105-9-548. BMC Bioinformatics. 2008. PMID: 19094235 Free PMC article.

5

Ontology-driven indexing of public datasets for translational bioinformatics.

Shah NH, Jonquet C, Chiang AP, Butte AJ, Chen R, Musen MA. Shah NH, et al. Among authors: chen r. BMC Bioinformatics. 2009 Feb 5;10 Suppl 2(Suppl 2):S1. doi: 10.1186/1471-2105-10-S2-S1. BMC Bioinformatics. 2009. PMID: 19208184 Free PMC article.

6

Network-based elucidation of human disease similarities reveals common functional modules enriched for pluripotent drug targets.

Suthram S, Dudley JT, Chiang AP, Chen R, Hastie TJ, Butte AJ. Suthram S, et al. Among authors: chen r. PLoS Comput Biol. 2010 Feb 5;6(2):e1000662. doi: 10.1371/journal.pcbi.1000662. PLoS Comput Biol. 2010. PMID: 20140234 Free PMC article.

7

Clinical assessment incorporating a personal genome.

Ashley EA, Butte AJ, Wheeler MT, Chen R, Klein TE, Dewey FE, Dudley JT, Ormond KE, Pavlovic A, Morgan AA, Pushkarev D, Neff NF, Hudgins L, Gong L, Hodges LM, Berlin DS, Thorn CF, Sangkuhl K, Hebert JM, Woon M, Sagreiya H, Whaley R, Knowles JW, Chou MF, Thakuria JV, Rosenbaum AM, Zaranek AW, Church GM, Greely HT, Quake SR, Altman RB. Ashley EA, et al. Among authors: chen r. Lancet. 2010 May 1;375(9725):1525-35. doi: 10.1016/S0140-6736(10)60452-7. Lancet. 2010. PMID: 20435227 Free PMC article.

8

Likelihood ratios for genome medicine.

Morgan AA, Chen R, Butte AJ. Morgan AA, et al. Among authors: chen r. Genome Med. 2010 May 17;2(5):30. doi: 10.1186/gm151. Genome Med. 2010. PMID: 20497613 Free PMC article.

9

Translational bioinformatics in the cloud: an affordable alternative.

Dudley JT, Pouliot Y, Chen R, Morgan AA, Butte AJ. Dudley JT, et al. Among authors: chen r. Genome Med. 2010 Aug 6;2(8):51. doi: 10.1186/gm172. Genome Med. 2010. PMID: 20691073 Free PMC article.

10

Identifying compartment-specific non-HLA targets after renal transplantation by integrating transcriptome and "antibodyome" measures.

Li L, Wadia P, Chen R, Kambham N, Naesens M, Sigdel TK, Miklos DB, Sarwal MM, Butte AJ. Li L, et al. Among authors: chen r. Proc Natl Acad Sci U S A. 2009 Mar 17;106(11):4148-53. doi: 10.1073/pnas.0900563106. Epub 2009 Feb 27. Proc Natl Acad Sci U S A. 2009. PMID: 19251643 Free PMC article.

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