Hess DC - Search Results

1

Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis.

Hess DC, Myers CL, Huttenhower C, Hibbs MA, Hayes AP, Paw J, Clore JJ, Mendoza RM, Luis BS, Nislow C, Giaever G, Costanzo M, Troyanskaya OG, Caudy AA. Hess DC, et al. PLoS Genet. 2009 Mar;5(3):e1000407. doi: 10.1371/journal.pgen.1000407. Epub 2009 Mar 20. PLoS Genet. 2009. PMID: 19300474 Free PMC article.

2

Predicting gene function in a hierarchical context with an ensemble of classifiers.

Guan Y, Myers CL, Hess DC, Barutcuoglu Z, Caudy AA, Troyanskaya OG. Guan Y, et al. Among authors: hess dc. Genome Biol. 2008;9 Suppl 1(Suppl 1):S3. doi: 10.1186/gb-2008-9-s1-s3. Epub 2008 Jun 27. Genome Biol. 2008. PMID: 18613947 Free PMC article.

3

Directing experimental biology: a case study in mitochondrial biogenesis.

Hibbs MA, Myers CL, Huttenhower C, Hess DC, Li K, Caudy AA, Troyanskaya OG. Hibbs MA, et al. Among authors: hess dc. PLoS Comput Biol. 2009 Mar;5(3):e1000322. doi: 10.1371/journal.pcbi.1000322. Epub 2009 Mar 20. PLoS Comput Biol. 2009. PMID: 19300515 Free PMC article.

4

The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction.

Huttenhower C, Hibbs MA, Myers CL, Caudy AA, Hess DC, Troyanskaya OG. Huttenhower C, et al. Among authors: hess dc. Bioinformatics. 2009 Sep 15;25(18):2404-10. doi: 10.1093/bioinformatics/btp397. Epub 2009 Jun 26. Bioinformatics. 2009. PMID: 19561015 Free PMC article.

5

Yeast metabolic and signaling genes are required for heat-shock survival and have little overlap with the heat-induced genes.

Gibney PA, Lu C, Caudy AA, Hess DC, Botstein D. Gibney PA, et al. Among authors: hess dc. Proc Natl Acad Sci U S A. 2013 Nov 12;110(46):E4393-402. doi: 10.1073/pnas.1318100110. Epub 2013 Oct 28. Proc Natl Acad Sci U S A. 2013. PMID: 24167267 Free PMC article.

6

Exploring the functional landscape of gene expression: directed search of large microarray compendia.

Hibbs MA, Hess DC, Myers CL, Huttenhower C, Li K, Troyanskaya OG. Hibbs MA, et al. Among authors: hess dc. Bioinformatics. 2007 Oct 15;23(20):2692-9. doi: 10.1093/bioinformatics/btm403. Epub 2007 Aug 27. Bioinformatics. 2007. PMID: 17724061

7

Simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway components.

Park CY, Hess DC, Huttenhower C, Troyanskaya OG. Park CY, et al. Among authors: hess dc. PLoS Comput Biol. 2010 Nov 24;6(11):e1001009. doi: 10.1371/journal.pcbi.1001009. PLoS Comput Biol. 2010. PMID: 21124865 Free PMC article.

8

Broad metabolic sensitivity profiling of a prototrophic yeast deletion collection.

VanderSluis B, Hess DC, Pesyna C, Krumholz EW, Syed T, Szappanos B, Nislow C, Papp B, Troyanskaya OG, Myers CL, Caudy AA. VanderSluis B, et al. Among authors: hess dc. Genome Biol. 2014 Apr 10;15(4):R64. doi: 10.1186/gb-2014-15-4-r64. Genome Biol. 2014. PMID: 24721214 Free PMC article.

9

Quantitative analysis of fitness and genetic interactions in yeast on a genome scale.

Baryshnikova A, Costanzo M, Kim Y, Ding H, Koh J, Toufighi K, Youn JY, Ou J, San Luis BJ, Bandyopadhyay S, Hibbs M, Hess D, Gingras AC, Bader GD, Troyanskaya OG, Brown GW, Andrews B, Boone C, Myers CL. Baryshnikova A, et al. Nat Methods. 2010 Dec;7(12):1017-24. doi: 10.1038/nmeth.1534. Epub 2010 Nov 14. Nat Methods. 2010. PMID: 21076421 Free PMC article.

10

Ammonium toxicity and potassium limitation in yeast.

Hess DC, Lu W, Rabinowitz JD, Botstein D. Hess DC, et al. PLoS Biol. 2006 Oct;4(11):e351. doi: 10.1371/journal.pbio.0040351. PLoS Biol. 2006. PMID: 17048990 Free PMC article.

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