Wang Y - Search Results

1

Analysis of DNA copy number alterations in ovarian serous tumors identifies new molecular genetic changes in low-grade and high-grade carcinomas.

Kuo KT, Guan B, Feng Y, Mao TL, Chen X, Jinawath N, Wang Y, Kurman RJ, Shih IeM, Wang TL. Kuo KT, et al. Among authors: wang y, wang tl. Cancer Res. 2009 May 1;69(9):4036-42. doi: 10.1158/0008-5472.CAN-08-3913. Epub 2009 Apr 21. Cancer Res. 2009. PMID: 19383911 Free PMC article.

2

DNA copy numbers profiles in affinity-purified ovarian clear cell carcinoma.

Kuo KT, Mao TL, Chen X, Feng Y, Nakayama K, Wang Y, Glas R, Ma MJ, Kurman RJ, Shih IeM, Wang TL. Kuo KT, et al. Among authors: wang y, wang tl. Clin Cancer Res. 2010 Apr 1;16(7):1997-2008. doi: 10.1158/1078-0432.CCR-09-2105. Epub 2010 Mar 16. Clin Cancer Res. 2010. PMID: 20233889 Free PMC article.

3

BACOM2.0 facilitates absolute normalization and quantification of somatic copy number alterations in heterogeneous tumor.

Fu Y, Yu G, Levine DA, Wang N, Shih IeM, Zhang Z, Clarke R, Wang Y. Fu Y, et al. Among authors: wang y, wang n. Sci Rep. 2015 Sep 9;5:13955. doi: 10.1038/srep13955. Sci Rep. 2015. PMID: 26350498 Free PMC article.

4

CINdex: A Bioconductor Package for Analysis of Chromosome Instability in DNA Copy Number Data.

Song L, Bhuvaneshwar K, Wang Y, Feng Y, Shih IM, Madhavan S, Gusev Y. Song L, et al. Among authors: wang y. Cancer Inform. 2017 Dec 13;16:1176935117746637. doi: 10.1177/1176935117746637. eCollection 2017. Cancer Inform. 2017. PMID: 29343938 Free PMC article.

5

ChIP-BIT: Bayesian inference of target genes using a novel joint probabilistic model of ChIP-seq profiles.

Chen X, Jung JG, Shajahan-Haq AN, Clarke R, Shih IeM, Wang Y, Magnani L, Wang TL, Xuan J. Chen X, et al. Among authors: wang y, wang tl. Nucleic Acids Res. 2016 Apr 20;44(7):e65. doi: 10.1093/nar/gkv1491. Epub 2015 Dec 23. Nucleic Acids Res. 2016. PMID: 26704972 Free PMC article.

6

Biologically inspired survival analysis based on integrating gene expression as mediator with genomic variants.

Youssef I, Clarke R, Shih IeM, Wang Y, Yu G. Youssef I, et al. Among authors: wang y. Comput Biol Med. 2016 Oct 1;77:231-9. doi: 10.1016/j.compbiomed.2016.08.020. Epub 2016 Aug 31. Comput Biol Med. 2016. PMID: 27619193

7

AISAIC: a software suite for accurate identification of significant aberrations in cancers.

Zhang B, Hou X, Yuan X, Shih IeM, Zhang Z, Clarke R, Wang RR, Fu Y, Madhavan S, Wang Y, Yu G. Zhang B, et al. Among authors: wang rr, wang y. Bioinformatics. 2014 Feb 1;30(3):431-3. doi: 10.1093/bioinformatics/btt693. Epub 2013 Nov 29. Bioinformatics. 2014. PMID: 24292941 Free PMC article.

8

UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples.

Wang N, Gong T, Clarke R, Chen L, Shih IeM, Zhang Z, Levine DA, Xuan J, Wang Y. Wang N, et al. Among authors: wang y. Bioinformatics. 2015 Jan 1;31(1):137-9. doi: 10.1093/bioinformatics/btu607. Epub 2014 Sep 10. Bioinformatics. 2015. PMID: 25212756 Free PMC article.

9

KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring.

Tian Y, Zhang B, Hoffman EP, Clarke R, Zhang Z, Shih IeM, Xuan J, Herrington DM, Wang Y. Tian Y, et al. Among authors: wang y. Bioinformatics. 2015 Jan 15;31(2):287-9. doi: 10.1093/bioinformatics/btu632. Epub 2014 Sep 30. Bioinformatics. 2015. PMID: 25273109 Free PMC article.

10

Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer.

Zhang H, Liu T, Zhang Z, Payne SH, Zhang B, McDermott JE, Zhou JY, Petyuk VA, Chen L, Ray D, Sun S, Yang F, Chen L, Wang J, Shah P, Cha SW, Aiyetan P, Woo S, Tian Y, Gritsenko MA, Clauss TR, Choi C, Monroe ME, Thomas S, Nie S, Wu C, Moore RJ, Yu KH, Tabb DL, Fenyö D, Bafna V, Wang Y, Rodriguez H, Boja ES, Hiltke T, Rivers RC, Sokoll L, Zhu H, Shih IM, Cope L, Pandey A, Zhang B, Snyder MP, Levine DA, Smith RD, Chan DW, Rodland KD; CPTAC Investigators. Zhang H, et al. Among authors: wang j, wang y. Cell. 2016 Jul 28;166(3):755-765. doi: 10.1016/j.cell.2016.05.069. Epub 2016 Jun 29. Cell. 2016. PMID: 27372738 Free PMC article.

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