Yamaguchi R - Search Results

1

Recursive regularization for inferring gene networks from time-course gene expression profiles.

Shimamura T, Imoto S, Yamaguchi R, Fujita A, Nagasaki M, Miyano S. Shimamura T, et al. Among authors: yamaguchi r. BMC Syst Biol. 2009 Apr 22;3:41. doi: 10.1186/1752-0509-3-41. BMC Syst Biol. 2009. PMID: 19386091 Free PMC article.

2

Genomic data assimilation for estimating hybrid functional Petri net from time-course gene expression data.

Nagasaki M, Yamaguchi R, Yoshida R, Imoto S, Doi A, Tamada Y, Matsuno H, Miyano S, Higuchi T. Nagasaki M, et al. Among authors: yamaguchi r. Genome Inform. 2006;17(1):46-61. Genome Inform. 2006. PMID: 17503355

3

Modeling gene expression regulatory networks with the sparse vector autoregressive model.

Fujita A, Sato JR, Garay-Malpartida HM, Yamaguchi R, Miyano S, Sogayar MC, Ferreira CE. Fujita A, et al. Among authors: yamaguchi r. BMC Syst Biol. 2007 Aug 30;1:39. doi: 10.1186/1752-0509-1-39. BMC Syst Biol. 2007. PMID: 17761000 Free PMC article.

4

Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models.

Hirose O, Yoshida R, Imoto S, Yamaguchi R, Higuchi T, Charnock-Jones DS, Print C, Miyano S. Hirose O, et al. Among authors: yamaguchi r. Bioinformatics. 2008 Apr 1;24(7):932-42. doi: 10.1093/bioinformatics/btm639. Epub 2008 Feb 21. Bioinformatics. 2008. PMID: 18292116

5

State-space approach with the maximum likelihood principle to identify the system generating time-course gene expression data of yeast.

Yamaguchi R, Higuchi T. Yamaguchi R, et al. Int J Data Min Bioinform. 2006;1(1):77-87. doi: 10.1504/ijdmb.2006.009922. Int J Data Min Bioinform. 2006. PMID: 18402043

6

Identification of activated transcription factors from microarray gene expression data of Kampo medicine-treated mice.

Yamaguchi R, Yamamoto M, Imoto S, Nagasaki M, Yoshida R, Tsuiji K, Ishige A, Asou H, Watanabe K, Miyano S. Yamaguchi R, et al. Genome Inform. 2007;18:119-29. Genome Inform. 2007. PMID: 18546480

7

Clustering samples characterized by time course gene expression profiles using the mixture of state space models.

Hirose O, Yoshida R, Yamaguchi R, Imoto S, Higuchi T, Miyano S. Hirose O, et al. Among authors: yamaguchi r. Genome Inform. 2007;18:258-66. Genome Inform. 2007. PMID: 18546493

8

Weighted lasso in graphical Gaussian modeling for large gene network estimation based on microarray data.

Shimamura T, Imoto S, Yamaguchi R, Miyano S. Shimamura T, et al. Among authors: yamaguchi r. Genome Inform. 2007;19:142-53. Genome Inform. 2007. PMID: 18546512

9

Bayesian learning of biological pathways on genomic data assimilation.

Yoshida R, Nagasaki M, Yamaguchi R, Imoto S, Miyano S, Higuchi T. Yoshida R, et al. Among authors: yamaguchi r. Bioinformatics. 2008 Nov 15;24(22):2592-601. doi: 10.1093/bioinformatics/btn483. Epub 2008 Sep 25. Bioinformatics. 2008. PMID: 18818216

10

Multivariate gene expression analysis reveals functional connectivity changes between normal/tumoral prostates.

Fujita A, Gomes LR, Sato JR, Yamaguchi R, Thomaz CE, Sogayar MC, Miyano S. Fujita A, et al. Among authors: yamaguchi r. BMC Syst Biol. 2008 Dec 5;2:106. doi: 10.1186/1752-0509-2-106. BMC Syst Biol. 2008. PMID: 19055846 Free PMC article.

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