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Page 1
DASMI: exchanging, annotating and assessing molecular interaction data.
Blankenburg H, Finn RD, Prlić A, Jenkinson AM, Ramírez F, Emig D, Schelhorn SE, Büch J, Lengauer T, Albrecht M. Blankenburg H, et al. Among authors: prlic a. Bioinformatics. 2009 May 15;25(10):1321-8. doi: 10.1093/bioinformatics/btp142. Bioinformatics. 2009. PMID: 19420069 Free PMC article.
Integrating sequence and structural biology with DAS.
Prlić A, Down TA, Kulesha E, Finn RD, Kähäri A, Hubbard TJ. Prlić A, et al. BMC Bioinformatics. 2007 Sep 12;8:333. doi: 10.1186/1471-2105-8-333. BMC Bioinformatics. 2007. PMID: 17850653 Free PMC article.
Integrating biological data--the Distributed Annotation System.
Jenkinson AM, Albrecht M, Birney E, Blankenburg H, Down T, Finn RD, Hermjakob H, Hubbard TJ, Jimenez RC, Jones P, Kähäri A, Kulesha E, Macías JR, Reeves GA, Prlić A. Jenkinson AM, et al. Among authors: prlic a. BMC Bioinformatics. 2008 Jul 22;9 Suppl 8(Suppl 8):S3. doi: 10.1186/1471-2105-9-S8-S3. BMC Bioinformatics. 2008. PMID: 18673527 Free PMC article.
The Protein Feature Ontology: a tool for the unification of protein feature annotations.
Reeves GA, Eilbeck K, Magrane M, O'Donovan C, Montecchi-Palazzi L, Harris MA, Orchard S, Jimenez RC, Prlic A, Hubbard TJ, Hermjakob H, Thornton JM. Reeves GA, et al. Among authors: prlic a. Bioinformatics. 2008 Dec 1;24(23):2767-72. doi: 10.1093/bioinformatics/btn528. Epub 2008 Oct 20. Bioinformatics. 2008. PMID: 18936051 Free PMC article.
Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank.
Prlic A, Kalro T, Bhattacharya R, Christie C, Burley SK, Rose PW. Prlic A, et al. Bioinformatics. 2016 Dec 15;32(24):3833-3835. doi: 10.1093/bioinformatics/btw547. Epub 2016 Aug 22. Bioinformatics. 2016. PMID: 27551105 Free PMC article.
To allow an interpretation of how PDB data relates to other publicly available annotations, we developed a novel data integration platform that maps 3D structural information across various datasets. ...AVAILABILITY AND IMPLEMENTATION: The new views are available from http …
To allow an interpretation of how PDB data relates to other publicly available annotations, we developed a novel data integration pla …
BioJava: an open-source framework for bioinformatics.
Holland RC, Down TA, Pocock M, Prlić A, Huen D, James K, Foisy S, Dräger A, Yates A, Heuer M, Schreiber MJ. Holland RC, et al. Among authors: prlic a. Bioinformatics. 2008 Sep 15;24(18):2096-7. doi: 10.1093/bioinformatics/btn397. Epub 2008 Aug 8. Bioinformatics. 2008. PMID: 18689808 Free PMC article.
Adding some SPICE to DAS.
Prlić A, Down TA, Hubbard TJ. Prlić A, et al. Bioinformatics. 2005 Sep 1;21 Suppl 2(Suppl 2):ii40-1. doi: 10.1093/bioinformatics/bti1106. Bioinformatics. 2005. PMID: 16204122 Free PMC article.
Ensembl 2008.
Flicek P, Aken BL, Beal K, Ballester B, Caccamo M, Chen Y, Clarke L, Coates G, Cunningham F, Cutts T, Down T, Dyer SC, Eyre T, Fitzgerald S, Fernandez-Banet J, Gräf S, Haider S, Hammond M, Holland R, Howe KL, Howe K, Johnson N, Jenkinson A, Kähäri A, Keefe D, Kokocinski F, Kulesha E, Lawson D, Longden I, Megy K, Meidl P, Overduin B, Parker A, Pritchard B, Prlic A, Rice S, Rios D, Schuster M, Sealy I, Slater G, Smedley D, Spudich G, Trevanion S, Vilella AJ, Vogel J, White S, Wood M, Birney E, Cox T, Curwen V, Durbin R, Fernandez-Suarez XM, Herrero J, Hubbard TJ, Kasprzyk A, Proctor G, Smith J, Ureta-Vidal A, Searle S. Flicek P, et al. Among authors: prlic a. Nucleic Acids Res. 2008 Jan;36(Database issue):D707-14. doi: 10.1093/nar/gkm988. Epub 2007 Nov 13. Nucleic Acids Res. 2008. PMID: 18000006 Free PMC article.
WILMA-automated annotation of protein sequences.
Prlić A, Domingues FS, Lackner P, Sippl MJ. Prlić A, et al. Bioinformatics. 2004 Jan 1;20(1):127-8. doi: 10.1093/bioinformatics/btg380. Bioinformatics. 2004. PMID: 14693821
53 results