Nesvizhskii AI - Search Results

1

Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data.

Choi H, Nesvizhskii AI, Ghosh D, Qin ZS. Choi H, et al. Among authors: nesvizhskii ai. Bioinformatics. 2009 Jul 15;25(14):1715-21. doi: 10.1093/bioinformatics/btp312. Epub 2009 May 14. Bioinformatics. 2009. PMID: 19447789 Free PMC article.

2

False discovery rates and related statistical concepts in mass spectrometry-based proteomics.

Choi H, Nesvizhskii AI. Choi H, et al. Among authors: nesvizhskii ai. J Proteome Res. 2008 Jan;7(1):47-50. doi: 10.1021/pr700747q. Epub 2007 Dec 8. J Proteome Res. 2008. PMID: 18067251

3

Humoral response profiling reveals pathways to prostate cancer progression.

Taylor BS, Pal M, Yu J, Laxman B, Kalyana-Sundaram S, Zhao R, Menon A, Wei JT, Nesvizhskii AI, Ghosh D, Omenn GS, Lubman DM, Chinnaiyan AM, Sreekumar A. Taylor BS, et al. Among authors: nesvizhskii ai. Mol Cell Proteomics. 2008 Mar;7(3):600-11. doi: 10.1074/mcp.M700263-MCP200. Epub 2007 Dec 11. Mol Cell Proteomics. 2008. PMID: 18077443 Free article.

4

Statistical validation of peptide identifications in large-scale proteomics using the target-decoy database search strategy and flexible mixture modeling.

Choi H, Ghosh D, Nesvizhskii AI. Choi H, et al. Among authors: nesvizhskii ai. J Proteome Res. 2008 Jan;7(1):286-92. doi: 10.1021/pr7006818. Epub 2007 Dec 14. J Proteome Res. 2008. PMID: 18078310

5

Semisupervised model-based validation of peptide identifications in mass spectrometry-based proteomics.

Choi H, Nesvizhskii AI. Choi H, et al. Among authors: nesvizhskii ai. J Proteome Res. 2008 Jan;7(1):254-65. doi: 10.1021/pr070542g. Epub 2007 Dec 27. J Proteome Res. 2008. PMID: 18159924

6

Significance analysis of spectral count data in label-free shotgun proteomics.

Choi H, Fermin D, Nesvizhskii AI. Choi H, et al. Among authors: nesvizhskii ai. Mol Cell Proteomics. 2008 Dec;7(12):2373-85. doi: 10.1074/mcp.M800203-MCP200. Epub 2008 Jul 20. Mol Cell Proteomics. 2008. PMID: 18644780 Free PMC article.

7

Adaptive discriminant function analysis and reranking of MS/MS database search results for improved peptide identification in shotgun proteomics.

Ding Y, Choi H, Nesvizhskii AI. Ding Y, et al. Among authors: nesvizhskii ai. J Proteome Res. 2008 Nov;7(11):4878-89. doi: 10.1021/pr800484x. Epub 2008 Sep 13. J Proteome Res. 2008. PMID: 18788775 Free PMC article.

8

A global protein kinase and phosphatase interaction network in yeast.

Breitkreutz A, Choi H, Sharom JR, Boucher L, Neduva V, Larsen B, Lin ZY, Breitkreutz BJ, Stark C, Liu G, Ahn J, Dewar-Darch D, Reguly T, Tang X, Almeida R, Qin ZS, Pawson T, Gingras AC, Nesvizhskii AI, Tyers M. Breitkreutz A, et al. Among authors: nesvizhskii ai. Science. 2010 May 21;328(5981):1043-6. doi: 10.1126/science.1176495. Science. 2010. PMID: 20489023 Free PMC article.

9

Analysis of protein complexes through model-based biclustering of label-free quantitative AP-MS data.

Choi H, Kim S, Gingras AC, Nesvizhskii AI. Choi H, et al. Among authors: nesvizhskii ai. Mol Syst Biol. 2010 Jun 22;6:385. doi: 10.1038/msb.2010.41. Mol Syst Biol. 2010. PMID: 20571534 Free PMC article.

10

SAINT: probabilistic scoring of affinity purification-mass spectrometry data.

Choi H, Larsen B, Lin ZY, Breitkreutz A, Mellacheruvu D, Fermin D, Qin ZS, Tyers M, Gingras AC, Nesvizhskii AI. Choi H, et al. Among authors: nesvizhskii ai. Nat Methods. 2011 Jan;8(1):70-3. doi: 10.1038/nmeth.1541. Epub 2010 Dec 5. Nat Methods. 2011. PMID: 21131968 Free PMC article.

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