Durbin R - Search Results

1

The Sequence Alignment/Map format and SAMtools.

Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup. Li H, et al. Among authors: durbin r. Bioinformatics. 2009 Aug 15;25(16):2078-9. doi: 10.1093/bioinformatics/btp352. Epub 2009 Jun 8. Bioinformatics. 2009. PMID: 19505943 Free PMC article.

2

A workbench for large-scale sequence homology analysis.

Sonnhammer EL, Durbin R. Sonnhammer EL, et al. Among authors: durbin r. Comput Appl Biosci. 1994 Jun;10(3):301-7. doi: 10.1093/bioinformatics/10.3.301. Comput Appl Biosci. 1994. PMID: 7922687

3

Sequence assembly with CAFTOOLS.

Dear S, Durbin R, Hillier L, Marth G, Thierry-Mieg J, Mott R. Dear S, et al. Among authors: durbin r. Genome Res. 1998 Mar;8(3):260-7. doi: 10.1101/gr.8.3.260. Genome Res. 1998. PMID: 9521929 Free PMC article.

4

Alfresco--a workbench for comparative genomic sequence analysis.

Jareborg N, Durbin R. Jareborg N, et al. Among authors: durbin r. Genome Res. 2000 Aug;10(8):1148-57. doi: 10.1101/gr.10.8.1148. Genome Res. 2000. PMID: 10958633 Free PMC article.

5

InterPro--an integrated documentation resource for protein families, domains and functional sites.

Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, Hulo N, Jonassen I, Kahn D, Kanapin A, Karavidopoulou Y, Lopez R, Marx B, Mulder NJ, Oinn TM, Pagni M, Servant F, Sigrist CJ, Zdobnov EM; InterPro Consortium. Apweiler R, et al. Among authors: durbin r. Bioinformatics. 2000 Dec;16(12):1145-50. doi: 10.1093/bioinformatics/16.12.1145. Bioinformatics. 2000. PMID: 11159333

6

Comparative ab initio prediction of gene structures using pair HMMs.

Meyer IM, Durbin R. Meyer IM, et al. Among authors: durbin r. Bioinformatics. 2002 Oct;18(10):1309-18. doi: 10.1093/bioinformatics/18.10.1309. Bioinformatics. 2002. PMID: 12376375

7

QuickTree: building huge Neighbour-Joining trees of protein sequences.

Howe K, Bateman A, Durbin R. Howe K, et al. Among authors: durbin r. Bioinformatics. 2002 Nov;18(11):1546-7. doi: 10.1093/bioinformatics/18.11.1546. Bioinformatics. 2002. PMID: 12424131

8

Improved techniques for the identification of pseudogenes.

Coin L, Durbin R. Coin L, et al. Among authors: durbin r. Bioinformatics. 2004 Aug 4;20 Suppl 1:i94-100. doi: 10.1093/bioinformatics/bth942. Bioinformatics. 2004. PMID: 15262786

9

Vertebrate gene finding from multiple-species alignments using a two-level strategy.

Carter D, Durbin R. Carter D, et al. Among authors: durbin r. Genome Biol. 2006;7 Suppl 1(Suppl 1):S6.1-12. doi: 10.1186/gb-2006-7-s1-s6. Epub 2006 Aug 7. Genome Biol. 2006. PMID: 16925840 Free PMC article.

10

Genomix: a method for combining gene-finders' predictions, which uses evolutionary conservation of sequence and intron-exon structure.

Coghlan A, Durbin R. Coghlan A, et al. Among authors: durbin r. Bioinformatics. 2007 Jun 15;23(12):1468-75. doi: 10.1093/bioinformatics/btm133. Epub 2007 May 5. Bioinformatics. 2007. PMID: 17483502 Free PMC article.

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