De Bleser P - Search Results

1

Human metallothionein expression under normal and pathological conditions: mechanisms of gene regulation based on in silico promoter analysis.

Laukens D, Waeytens A, De Bleser P, Cuvelier C, De Vos M. Laukens D, et al. Among authors: de vos m, de bleser p. Crit Rev Eukaryot Gene Expr. 2009;19(4):301-17. doi: 10.1615/critreveukargeneexpr.v19.i4.40. Crit Rev Eukaryot Gene Expr. 2009. PMID: 19817707 Review.

2

A distance difference matrix approach to identifying transcription factors that regulate differential gene expression.

De Bleser P, Hooghe B, Vlieghe D, van Roy F. De Bleser P, et al. Genome Biol. 2007;8(5):R83. doi: 10.1186/gb-2007-8-5-r83. Genome Biol. 2007. PMID: 17504544 Free PMC article.

3

ConTra: a promoter alignment analysis tool for identification of transcription factor binding sites across species.

Hooghe B, Hulpiau P, van Roy F, De Bleser P. Hooghe B, et al. Among authors: de bleser p. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W128-32. doi: 10.1093/nar/gkn195. Epub 2008 May 3. Nucleic Acids Res. 2008. PMID: 18453628 Free PMC article.

4

ConTra v2: a tool to identify transcription factor binding sites across species, update 2011.

Broos S, Hulpiau P, Galle J, Hooghe B, Van Roy F, De Bleser P. Broos S, et al. Among authors: de bleser p. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W74-8. doi: 10.1093/nar/gkr355. Epub 2011 May 16. Nucleic Acids Res. 2011. PMID: 21576231 Free PMC article.

5

PhysBinder: Improving the prediction of transcription factor binding sites by flexible inclusion of biophysical properties.

Broos S, Soete A, Hooghe B, Moran R, van Roy F, De Bleser P. Broos S, et al. Among authors: de bleser p. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W531-4. doi: 10.1093/nar/gkt288. Epub 2013 Apr 24. Nucleic Acids Res. 2013. PMID: 23620286 Free PMC article.

6

Genome-wide computational analysis reveals cardiomyocyte-specific transcriptional Cis-regulatory motifs that enable efficient cardiac gene therapy.

Rincon MY, Sarcar S, Danso-Abeam D, Keyaerts M, Matrai J, Samara-Kuko E, Acosta-Sanchez A, Athanasopoulos T, Dickson G, Lahoutte T, De Bleser P, VandenDriessche T, Chuah MK. Rincon MY, et al. Among authors: de bleser p. Mol Ther. 2015 Jan;23(1):43-52. doi: 10.1038/mt.2014.178. Epub 2014 Sep 8. Mol Ther. 2015. PMID: 25195597 Free PMC article.

7

Next-generation muscle-directed gene therapy by in silico vector design.

Sarcar S, Tulalamba W, Rincon MY, Tipanee J, Pham HQ, Evens H, Boon D, Samara-Kuko E, Keyaerts M, Loperfido M, Berardi E, Jarmin S, In't Veld P, Dickson G, Lahoutte T, Sampaolesi M, De Bleser P, VandenDriessche T, Chuah MK. Sarcar S, et al. Among authors: de bleser p. Nat Commun. 2019 Jan 30;10(1):492. doi: 10.1038/s41467-018-08283-7. Nat Commun. 2019. PMID: 30700722 Free PMC article.

8

Liver-specific transcriptional modules identified by genome-wide in silico analysis enable efficient gene therapy in mice and non-human primates.

Chuah MK, Petrus I, De Bleser P, Le Guiner C, Gernoux G, Adjali O, Nair N, Willems J, Evens H, Rincon MY, Matrai J, Di Matteo M, Samara-Kuko E, Yan B, Acosta-Sanchez A, Meliani A, Cherel G, Blouin V, Christophe O, Moullier P, Mingozzi F, VandenDriessche T. Chuah MK, et al. Among authors: de bleser p. Mol Ther. 2014 Sep;22(9):1605-13. doi: 10.1038/mt.2014.114. Epub 2014 Jun 23. Mol Ther. 2014. PMID: 24954473 Free PMC article.

9

ConTra v3: a tool to identify transcription factor binding sites across species, update 2017.

Kreft L, Soete A, Hulpiau P, Botzki A, Saeys Y, De Bleser P. Kreft L, et al. Among authors: de bleser p. Nucleic Acids Res. 2017 Jul 3;45(W1):W490-W494. doi: 10.1093/nar/gkx376. Nucleic Acids Res. 2017. PMID: 28472390 Free PMC article.

10

A flexible integrative approach based on random forest improves prediction of transcription factor binding sites.

Hooghe B, Broos S, van Roy F, De Bleser P. Hooghe B, et al. Among authors: de bleser p. Nucleic Acids Res. 2012 Aug;40(14):e106. doi: 10.1093/nar/gks283. Epub 2012 Apr 5. Nucleic Acids Res. 2012. PMID: 22492513 Free PMC article.

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