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The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes.
Angly FE, Willner D, Prieto-Davó A, Edwards RA, Schmieder R, Vega-Thurber R, Antonopoulos DA, Barott K, Cottrell MT, Desnues C, Dinsdale EA, Furlan M, Haynes M, Henn MR, Hu Y, Kirchman DL, McDole T, McPherson JD, Meyer F, Miller RM, Mundt E, Naviaux RK, Rodriguez-Mueller B, Stevens R, Wegley L, Zhang L, Zhu B, Rohwer F. Angly FE, et al. Among authors: barott k. PLoS Comput Biol. 2009 Dec;5(12):e1000593. doi: 10.1371/journal.pcbi.1000593. Epub 2009 Dec 11. PLoS Comput Biol. 2009. PMID: 20011103 Free PMC article.
Oxygen minimum zones harbour novel viral communities with low diversity.
Cassman N, Prieto-Davó A, Walsh K, Silva GG, Angly F, Akhter S, Barott K, Busch J, McDole T, Haggerty JM, Willner D, Alarcón G, Ulloa O, DeLong EF, Dutilh BE, Rohwer F, Dinsdale EA. Cassman N, et al. Among authors: barott k. Environ Microbiol. 2012 Nov;14(11):3043-65. doi: 10.1111/j.1462-2920.2012.02891.x. Epub 2012 Oct 5. Environ Microbiol. 2012. PMID: 23039259
Viral information.
Rohwer F, Barott K. Rohwer F, et al. Among authors: barott k. Biol Philos. 2013 Mar;28(2):283-297. doi: 10.1007/s10539-012-9344-0. Epub 2012 Oct 31. Biol Philos. 2013. PMID: 23482918 Free PMC article.
Black reefs: iron-induced phase shifts on coral reefs.
Kelly LW, Barott KL, Dinsdale E, Friedlander AM, Nosrat B, Obura D, Sala E, Sandin SA, Smith JE, Vermeij MJ, Williams GJ, Willner D, Rohwer F. Kelly LW, et al. ISME J. 2012 Mar;6(3):638-49. doi: 10.1038/ismej.2011.114. Epub 2011 Sep 1. ISME J. 2012. PMID: 21881615 Free PMC article.
Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors.
Kelly LW, Williams GJ, Barott KL, Carlson CA, Dinsdale EA, Edwards RA, Haas AF, Haynes M, Lim YW, McDole T, Nelson CE, Sala E, Sandin SA, Smith JE, Vermeij MJ, Youle M, Rohwer F. Kelly LW, et al. Proc Natl Acad Sci U S A. 2014 Jul 15;111(28):10227-32. doi: 10.1073/pnas.1403319111. Epub 2014 Jun 30. Proc Natl Acad Sci U S A. 2014. PMID: 24982156 Free PMC article.
43 results