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Conserved synteny at the protein family level reveals genes underlying Shewanella species' cold tolerance and predicts their novel phenotypes.
Karpinets TV, Obraztsova AY, Wang Y, Schmoyer DD, Kora GH, Park BH, Serres MH, Romine MF, Land ML, Kothe TB, Fredrickson JK, Nealson KH, Uberbacher EC. Karpinets TV, et al. Among authors: uberbacher ec. Funct Integr Genomics. 2010 Mar;10(1):97-110. doi: 10.1007/s10142-009-0142-y. Epub 2009 Oct 3. Funct Integr Genomics. 2010. PMID: 19802638 Free PMC article.
BESC knowledgebase public portal.
Syed MH, Karpinets TV, Parang M, Leuze MR, Park BH, Hyatt D, Brown SD, Moulton S, Galloway MD, Uberbacher EC. Syed MH, et al. Among authors: uberbacher ec. Bioinformatics. 2012 Mar 1;28(5):750-1. doi: 10.1093/bioinformatics/bts016. Epub 2012 Jan 11. Bioinformatics. 2012. PMID: 22238270 Free PMC article.
Analyzing large biological datasets with association networks.
Karpinets TV, Park BH, Uberbacher EC. Karpinets TV, et al. Among authors: uberbacher ec. Nucleic Acids Res. 2012 Sep 1;40(17):e131. doi: 10.1093/nar/gks403. Epub 2012 May 25. Nucleic Acids Res. 2012. PMID: 22638576 Free PMC article.
Ebolavirus comparative genomics.
Jun SR, Leuze MR, Nookaew I, Uberbacher EC, Land M, Zhang Q, Wanchai V, Chai J, Nielsen M, Trolle T, Lund O, Buzard GS, Pedersen TD, Wassenaar TM, Ussery DW. Jun SR, et al. Among authors: uberbacher ec. FEMS Microbiol Rev. 2015 Sep;39(5):764-78. doi: 10.1093/femsre/fuv031. Epub 2015 Jul 14. FEMS Microbiol Rev. 2015. PMID: 26175035 Free PMC article. Review.
MicroRNAs Form Triplexes with Double Stranded DNA at Sequence-Specific Binding Sites; a Eukaryotic Mechanism via which microRNAs Could Directly Alter Gene Expression.
Paugh SW, Coss DR, Bao J, Laudermilk LT, Grace CR, Ferreira AM, Waddell MB, Ridout G, Naeve D, Leuze M, LoCascio PF, Panetta JC, Wilkinson MR, Pui CH, Naeve CW, Uberbacher EC, Bonten EJ, Evans WE. Paugh SW, et al. Among authors: uberbacher ec. PLoS Comput Biol. 2016 Feb 4;12(2):e1004744. doi: 10.1371/journal.pcbi.1004744. eCollection 2016 Feb. PLoS Comput Biol. 2016. PMID: 26844769 Free PMC article.
65 results