Chen Y - Search Results

1

Identification of responsive gene modules by network-based gene clustering and extending: application to inflammation and angiogenesis.

Gu J, Chen Y, Li S, Li Y. Gu J, et al. Among authors: chen y. BMC Syst Biol. 2010 Apr 21;4:47. doi: 10.1186/1752-0509-4-47. BMC Syst Biol. 2010. PMID: 20406493 Free PMC article.

2

Time-course network analysis reveals TNF-α can promote G1/S transition of cell cycle in vascular endothelial cells.

Chen Y, Gu J, Li D, Li S. Chen Y, et al. Bioinformatics. 2012 Jan 1;28(1):1-4. doi: 10.1093/bioinformatics/btr619. Epub 2011 Nov 15. Bioinformatics. 2012. PMID: 22088844

3

Gene module based regulator inference identifying miR-139 as a tumor suppressor in colorectal cancer.

Gu J, Chen Y, Huang H, Yin L, Xie Z, Zhang MQ. Gu J, et al. Among authors: chen y. Mol Biosyst. 2014 Dec;10(12):3249-54. doi: 10.1039/c4mb00329b. Epub 2014 Oct 7. Mol Biosyst. 2014. PMID: 25286864

4

Network embedding-based representation learning for single cell RNA-seq data.

Li X, Chen W, Chen Y, Zhang X, Gu J, Zhang MQ. Li X, et al. Among authors: chen w, chen y. Nucleic Acids Res. 2017 Nov 2;45(19):e166. doi: 10.1093/nar/gkx750. Nucleic Acids Res. 2017. PMID: 28977434 Free PMC article.

5

Integrating next-generation sequencing and traditional tongue diagnosis to determine tongue coating microbiome.

Jiang B, Liang X, Chen Y, Ma T, Liu L, Li J, Jiang R, Chen T, Zhang X, Li S. Jiang B, et al. Among authors: chen t, chen y. Sci Rep. 2012;2:936. doi: 10.1038/srep00936. Epub 2012 Dec 6. Sci Rep. 2012. PMID: 23226834 Free PMC article.

6

BL-Hi-C is an efficient and sensitive approach for capturing structural and regulatory chromatin interactions.

Liang Z, Li G, Wang Z, Djekidel MN, Li Y, Qian MP, Zhang MQ, Chen Y. Liang Z, et al. Among authors: chen y. Nat Commun. 2017 Nov 20;8(1):1622. doi: 10.1038/s41467-017-01754-3. Nat Commun. 2017. PMID: 29158486 Free PMC article.

7

Engineering EMT using 3D micro-scaffold to promote hepatic functions for drug hepatotoxicity evaluation.

Wang J, Chen F, Liu L, Qi C, Wang B, Yan X, Huang C, Hou W, Zhang MQ, Chen Y, Du Y. Wang J, et al. Among authors: chen f, chen y. Biomaterials. 2016 Jun;91:11-22. doi: 10.1016/j.biomaterials.2016.03.001. Epub 2016 Mar 9. Biomaterials. 2016. PMID: 26994875

8

HiCDB: a sensitive and robust method for detecting contact domain boundaries.

Chen F, Li G, Zhang MQ, Chen Y. Chen F, et al. Among authors: chen y. Nucleic Acids Res. 2018 Nov 30;46(21):11239-11250. doi: 10.1093/nar/gky789. Nucleic Acids Res. 2018. PMID: 30184171 Free PMC article.

9

GTSE1, CDC20, PCNA, and MCM6 Synergistically Affect Regulations in Cell Cycle and Indicate Poor Prognosis in Liver Cancer.

Zheng Y, Shi Y, Yu S, Han Y, Kang K, Xu H, Gu H, Sang X, Chen Y, Wang J. Zheng Y, et al. Among authors: chen y. Anal Cell Pathol (Amst). 2019 Dec 30;2019:1038069. doi: 10.1155/2019/1038069. eCollection 2019. Anal Cell Pathol (Amst). 2019. PMID: 32082966 Free PMC article.

10

3CPET: finding co-factor complexes from ChIA-PET data using a hierarchical Dirichlet process.

Djekidel MN, Liang Z, Wang Q, Hu Z, Li G, Chen Y, Zhang MQ. Djekidel MN, et al. Among authors: chen y. Genome Biol. 2015 Dec 22;16:288. doi: 10.1186/s13059-015-0851-6. Genome Biol. 2015. PMID: 26694485 Free PMC article.

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