Dedachi K - Search Results

1

One-electron redox processes in a cyclic selenide and a selenoxide: a pulse radiolysis study.

Singh BG, Thomas E, Kumakura F, Dedachi K, Iwaoka M, Priyadarsini KI. Singh BG, et al. Among authors: dedachi k. J Phys Chem A. 2010 Aug 19;114(32):8271-7. doi: 10.1021/jp103727e. J Phys Chem A. 2010. PMID: 20666479

2

Rapid and quantitative disulfide bond formation for a polypeptide chain using a cyclic selenoxide reagent in an aqueous medium.

Arai K, Dedachi K, Iwaoka M. Arai K, et al. Among authors: dedachi k. Chemistry. 2011 Jan 10;17(2):481-5. doi: 10.1002/chem.201002742. Epub 2010 Dec 13. Chemistry. 2011. PMID: 21207564

3

Model study using designed selenopeptides on the importance of the catalytic triad for the antioxidative functions of glutathione peroxidase.

Takei T, Urabe Y, Asahina Y, Hojo H, Nomura T, Dedachi K, Arai K, Iwaoka M. Takei T, et al. Among authors: dedachi k. J Phys Chem B. 2014 Jan 16;118(2):492-500. doi: 10.1021/jp4113975. Epub 2013 Dec 30. J Phys Chem B. 2014. PMID: 24354504

4

Development of SAAP3D force field and the application to replica-exchange Monte Carlo simulation for chignolin and C-peptide.

Iwaoka M, Suzuki T, Shoji Y, Dedachi K, Shimosato T, Minezaki T, Hojo H, Onuki H, Hirota H. Iwaoka M, et al. Among authors: dedachi k. J Comput Aided Mol Des. 2017 Dec;31(12):1039-1052. doi: 10.1007/s10822-017-0084-8. Epub 2017 Nov 17. J Comput Aided Mol Des. 2017. PMID: 29147837

5

Specific interactions and binding free energies between thermolysin and dipeptides: molecular simulations combined with ab initio molecular orbital and classical vibrational analysis.

Dedachi K, Hirakawa T, Fujita S, Khan MT, Sylte I, Kurita N. Dedachi K, et al. J Comput Chem. 2011 Nov 15;32(14):3047-57. doi: 10.1002/jcc.21887. Epub 2011 Aug 3. J Comput Chem. 2011. PMID: 21815174

6

Specific interactions and binding energies between thermolysin and potent inhibitors: molecular simulations based on ab initio molecular orbital method.

Hirakawa T, Fujita S, Ohyama T, Dedachi K, Khan MT, Sylte I, Kurita N. Hirakawa T, et al. Among authors: dedachi k. J Mol Graph Model. 2012 Mar;33:1-11. doi: 10.1016/j.jmgm.2011.10.006. Epub 2011 Nov 2. J Mol Graph Model. 2012. PMID: 22112671

7

Charge Transfer Through Single- and Double-strand DNAs: Simulations Based on Molecular Dynamics and Molecular Orbital Methods.

Dedachi KI, Natsume T, Nakatsu T, Tanaka S, Ishikawa Y, Kurita N. Dedachi KI, et al. Chem Phys Lett. 2007 Feb 27;436(1-3):244-251. doi: 10.1016/j.cplett.2007.01.045. Chem Phys Lett. 2007. PMID: 19587841 Free PMC article.

8

Specific interactions between aryl hydrocarbon receptor and dioxin congeners: ab initio fragment molecular orbital calculations.

Yoshikawa E, Miyagi S, Dedachi K, Ishihara-Sugano M, Itoh S, Kurita N. Yoshikawa E, et al. Among authors: dedachi k. J Mol Graph Model. 2010 Sep;29(2):197-205. doi: 10.1016/j.jmgm.2010.06.008. Epub 2010 Jun 25. J Mol Graph Model. 2010. PMID: 20655778

9

Dipeptide inhibitors of thermolysin and angiotensin I-converting enzyme.

Khan MT, Dedachi K, Matsui T, Kurita N, Borgatti M, Gambari R, Sylte I. Khan MT, et al. Among authors: dedachi k. Curr Top Med Chem. 2012;12(16):1748-62. doi: 10.2174/156802612803989246. Curr Top Med Chem. 2012. PMID: 23030610

10

Hybridization energies of double strands composed of DNA, RNA, PNA and LNA.

Natsume T, Ishikawa Y, Dedachi K, Tsukamoto T, Kurita N. Natsume T, et al. Among authors: dedachi k. Chem Phys Lett. 2007 Jan 26;434(1-3):133-138. doi: 10.1016/j.cplett.2006.12.017. Chem Phys Lett. 2007. PMID: 18548123 Free PMC article.

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