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Functional analysis of multiple genomic signatures demonstrates that classification algorithms choose phenotype-related genes.
Shi W, Bessarabova M, Dosymbekov D, Dezso Z, Nikolskaya T, Dudoladova M, Serebryiskaya T, Bugrim A, Guryanov A, Brennan RJ, Shah R, Dopazo J, Chen M, Deng Y, Shi T, Jurman G, Furlanello C, Thomas RS, Corton JC, Tong W, Shi L, Nikolsky Y. Shi W, et al. Among authors: thomas rs. Pharmacogenomics J. 2010 Aug;10(4):310-23. doi: 10.1038/tpj.2010.35. Pharmacogenomics J. 2010. PMID: 20676069 Free PMC article.
A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data.
Luo J, Schumacher M, Scherer A, Sanoudou D, Megherbi D, Davison T, Shi T, Tong W, Shi L, Hong H, Zhao C, Elloumi F, Shi W, Thomas R, Lin S, Tillinghast G, Liu G, Zhou Y, Herman D, Li Y, Deng Y, Fang H, Bushel P, Woods M, Zhang J. Luo J, et al. Pharmacogenomics J. 2010 Aug;10(4):278-91. doi: 10.1038/tpj.2010.57. Pharmacogenomics J. 2010. PMID: 20676067 Free PMC article.
Analytical Quality Evaluation of the Tox21 Compound Library.
Richard AM, Tao D, LeClair CA, Leister W, Tretyakov KV, White E 5th, Lewis KC, Sefler A, Shinn P, Collins BJ, Nguyen DT, Ye L, Zhao T, Xu T, Williams AJ, Waidyanatha S, Thomas RS, Tice R, Simeonov A, Huang R. Richard AM, et al. Among authors: thomas rs. Chem Res Toxicol. 2025 Jan 20;38(1):15-41. doi: 10.1021/acs.chemrestox.4c00330. Epub 2024 Dec 31. Chem Res Toxicol. 2025. PMID: 39829241 Free PMC article. Review.
Progress in toxicogenomics to protect human health.
Meier MJ, Harrill J, Johnson K, Thomas RS, Tong W, Rager JE, Yauk CL. Meier MJ, et al. Among authors: thomas rs. Nat Rev Genet. 2025 Feb;26(2):105-122. doi: 10.1038/s41576-024-00767-1. Epub 2024 Sep 2. Nat Rev Genet. 2025. PMID: 39223311 Review.
Value of Information Case Study on the Human Health and Economic Trade-offs Associated with the Timeliness, Uncertainty, and Costs of the Draft EPA Transcriptomic Assessment Product (ETAP).
Devito M, Farrell P, Hagiwara S, Harrill AH, Krewski D, Paoli G, Thomas RS. Devito M, et al. Among authors: thomas rs. Washington (DC): U.S. Environmental Protection Agency; 2024 Jul. Report No.: EPA/600/X-23/082. Washington (DC): U.S. Environmental Protection Agency; 2024 Jul. Report No.: EPA/600/X-23/082. PMID: 39383270 Free Books & Documents. Review. No abstract available.
295 results