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Copy number variation has little impact on bead-array-based measures of DNA methylation.
Houseman EA, Christensen BC, Karagas MR, Wrensch MR, Nelson HH, Wiemels JL, Zheng S, Wiencke JK, Kelsey KT, Marsit CJ. Houseman EA, et al. Among authors: zheng s. Bioinformatics. 2009 Aug 15;25(16):1999-2005. doi: 10.1093/bioinformatics/btp364. Epub 2009 Jun 19. Bioinformatics. 2009. PMID: 19542153 Free PMC article.
Differentiation of lung adenocarcinoma, pleural mesothelioma, and nonmalignant pulmonary tissues using DNA methylation profiles.
Christensen BC, Marsit CJ, Houseman EA, Godleski JJ, Longacker JL, Zheng S, Yeh RF, Wrensch MR, Wiemels JL, Karagas MR, Bueno R, Sugarbaker DJ, Nelson HH, Wiencke JK, Kelsey KT. Christensen BC, et al. Among authors: zheng s. Cancer Res. 2009 Aug 1;69(15):6315-21. doi: 10.1158/0008-5472.CAN-09-1073. Epub 2009 Jul 28. Cancer Res. 2009. PMID: 19638575 Free PMC article.
Identification of methylated genes associated with aggressive bladder cancer.
Marsit CJ, Houseman EA, Christensen BC, Gagne L, Wrensch MR, Nelson HH, Wiemels J, Zheng S, Wiencke JK, Andrew AS, Schned AR, Karagas MR, Kelsey KT. Marsit CJ, et al. Among authors: zheng s. PLoS One. 2010 Aug 23;5(8):e12334. doi: 10.1371/journal.pone.0012334. PLoS One. 2010. PMID: 20808801 Free PMC article.
DNA methylation, isocitrate dehydrogenase mutation, and survival in glioma.
Christensen BC, Smith AA, Zheng S, Koestler DC, Houseman EA, Marsit CJ, Wiemels JL, Nelson HH, Karagas MR, Wrensch MR, Kelsey KT, Wiencke JK. Christensen BC, et al. Among authors: zheng s. J Natl Cancer Inst. 2011 Jan 19;103(2):143-53. doi: 10.1093/jnci/djq497. Epub 2010 Dec 16. J Natl Cancer Inst. 2011. PMID: 21163902 Free PMC article.
Epigenetic profiles distinguish pleural mesothelioma from normal pleura and predict lung asbestos burden and clinical outcome.
Christensen BC, Houseman EA, Godleski JJ, Marsit CJ, Longacker JL, Roelofs CR, Karagas MR, Wrensch MR, Yeh RF, Nelson HH, Wiemels JL, Zheng S, Wiencke JK, Bueno R, Sugarbaker DJ, Kelsey KT. Christensen BC, et al. Among authors: zheng s. Cancer Res. 2009 Jan 1;69(1):227-34. doi: 10.1158/0008-5472.CAN-08-2586. Cancer Res. 2009. PMID: 19118007 Free PMC article.
DNA hypermethylation profiles associated with glioma subtypes and EZH2 and IGFBP2 mRNA expression.
Zheng S, Houseman EA, Morrison Z, Wrensch MR, Patoka JS, Ramos C, Haas-Kogan DA, McBride S, Marsit CJ, Christensen BC, Nelson HH, Stokoe D, Wiemels JL, Chang SM, Prados MD, Tihan T, Vandenberg SR, Kelsey KT, Berger MS, Wiencke JK. Zheng S, et al. Neuro Oncol. 2011 Mar;13(3):280-9. doi: 10.1093/neuonc/noq190. Neuro Oncol. 2011. PMID: 21339190 Free PMC article.
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