Chen DZ - Search Results

1

FusionSeq: a modular framework for finding gene fusions by analyzing paired-end RNA-sequencing data.

Sboner A, Habegger L, Pflueger D, Terry S, Chen DZ, Rozowsky JS, Tewari AK, Kitabayashi N, Moss BJ, Chee MS, Demichelis F, Rubin MA, Gerstein MB. Sboner A, et al. Among authors: chen dz. Genome Biol. 2010;11(10):R104. doi: 10.1186/gb-2010-11-10-r104. Epub 2010 Oct 21. Genome Biol. 2010. PMID: 20964841 Free PMC article.

2

VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment.

Habegger L, Balasubramanian S, Chen DZ, Khurana E, Sboner A, Harmanci A, Rozowsky J, Clarke D, Snyder M, Gerstein M. Habegger L, et al. Among authors: chen dz. Bioinformatics. 2012 Sep 1;28(17):2267-9. doi: 10.1093/bioinformatics/bts368. Epub 2012 Jun 28. Bioinformatics. 2012. PMID: 22743228 Free PMC article.

3

Architecture of the human regulatory network derived from ENCODE data.

Gerstein MB, Kundaje A, Hariharan M, Landt SG, Yan KK, Cheng C, Mu XJ, Khurana E, Rozowsky J, Alexander R, Min R, Alves P, Abyzov A, Addleman N, Bhardwaj N, Boyle AP, Cayting P, Charos A, Chen DZ, Cheng Y, Clarke D, Eastman C, Euskirchen G, Frietze S, Fu Y, Gertz J, Grubert F, Harmanci A, Jain P, Kasowski M, Lacroute P, Leng JJ, Lian J, Monahan H, O'Geen H, Ouyang Z, Partridge EC, Patacsil D, Pauli F, Raha D, Ramirez L, Reddy TE, Reed B, Shi M, Slifer T, Wang J, Wu L, Yang X, Yip KY, Zilberman-Schapira G, Batzoglou S, Sidow A, Farnham PJ, Myers RM, Weissman SM, Snyder M. Gerstein MB, et al. Among authors: chen dz. Nature. 2012 Sep 6;489(7414):91-100. doi: 10.1038/nature11245. Nature. 2012. PMID: 22955619 Free PMC article.

4

Chromosome X-wide common variant association study in autism spectrum disorder.

Mendes M, Chen DZ, Engchuan W, Leal TP, Thiruvahindrapuram B, Trost B, Howe JL, Pellecchia G, Nalpathamkalam T, Alexandrova R, Salazar NB, McKee EA, Rivera-Alfaro N, Lai MC, Bandres-Ciga S, Roshandel D, Bradley CA, Anagnostou E, Sun L, Scherer SW. Mendes M, et al. Among authors: chen dz. Am J Hum Genet. 2024 Dec 9:S0002-9297(24)00417-8. doi: 10.1016/j.ajhg.2024.11.008. Online ahead of print. Am J Hum Genet. 2024. PMID: 39706197

5

Monovision versus multifocality for presbyopia during primary phacoemulsification: systematic review and network meta-analysis.

Hong ASY, Jin E, Shen L, Chen DZ. Hong ASY, et al. Among authors: chen dz. Eye (Lond). 2024 Nov 15. doi: 10.1038/s41433-024-03454-x. Online ahead of print. Eye (Lond). 2024. PMID: 39548216 Review.

6

Strikingly Facile Cleavage of N-H/N-O Bonds Induced by Surface Frustrated Lewis Pair on CeO₂(110) to Boost NO Reduction by NH₃.

Yang S, Cheng S, Xu F, Liu X, Zhu X, Liu H, Liu F, Chen DZ, Sun C. Yang S, et al. Among authors: chen dz. Environ Sci Technol. 2024 Oct 22;58(42):19027-19037. doi: 10.1021/acs.est.4c05249. Epub 2024 Oct 10. Environ Sci Technol. 2024. PMID: 39387477

7

A Protein-Context Enhanced Master Slave Framework for Zero-Shot Drug Target Interaction Prediction.

Xu Y, Zhou J, Ying H, Chen J, Chen W, Chen DZ, Wu J. Xu Y, et al. Among authors: chen dz. IEEE/ACM Trans Comput Biol Bioinform. 2024 Sep 27;PP. doi: 10.1109/TCBB.2024.3468434. Online ahead of print. IEEE/ACM Trans Comput Biol Bioinform. 2024. PMID: 39331551

8

Utilizing artificial intelligence for precision exploration of N protein targeting phenanthridine sars-cov-2 inhibitors: A novel approach.

Xiang ZR, Fan SR, Ren J, Ruan T, Chen Y, Zhang YW, Wang YT, Yu ZZ, Wang CF, Sun XL, Hao XJ, Chen DZ. Xiang ZR, et al. Among authors: chen dz. Eur J Med Chem. 2024 Dec 5;279:116885. doi: 10.1016/j.ejmech.2024.116885. Epub 2024 Sep 18. Eur J Med Chem. 2024. PMID: 39307103

9

Role of the GalNAc-galectin pathway in the healing of premature rupture of membranes.

Chen JL, Liu L, Peng XR, Wang Y, Xiang X, Chen Y, Xu DX, Chen DZ. Chen JL, et al. Among authors: chen dz. Mol Med. 2024 Sep 4;30(1):138. doi: 10.1186/s10020-024-00908-6. Mol Med. 2024. PMID: 39232672 Free PMC article.

10

Mapping cellular interactions from spatially resolved transcriptomics data.

Zhu J, Wang Y, Chang WY, Malewska A, Napolitano F, Gahan JC, Unni N, Zhao M, Yuan R, Wu F, Yue L, Guo L, Zhao Z, Chen DZ, Hannan R, Zhang S, Xiao G, Mu P, Hanker AB, Strand D, Arteaga CL, Desai N, Wang X, Xie Y, Wang T. Zhu J, et al. Among authors: chen dz. Nat Methods. 2024 Oct;21(10):1830-1842. doi: 10.1038/s41592-024-02408-1. Epub 2024 Sep 3. Nat Methods. 2024. PMID: 39227721

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