Alkan C - Search Results

1

Diversity of human copy number variation and multicopy genes.

Sudmant PH, Kitzman JO, Antonacci F, Alkan C, Malig M, Tsalenko A, Sampas N, Bruhn L, Shendure J; 1000 Genomes Project; Eichler EE. Sudmant PH, et al. Among authors: alkan c. Science. 2010 Oct 29;330(6004):641-6. doi: 10.1126/science.1197005. Science. 2010. PMID: 21030649 Free PMC article.

2

BLEND: a fast, memory-efficient and accurate mechanism to find fuzzy seed matches in genome analysis.

Firtina C, Park J, Alser M, Kim JS, Cali DS, Shahroodi T, Ghiasi NM, Singh G, Kanellopoulos K, Alkan C, Mutlu O. Firtina C, et al. Among authors: alkan c. NAR Genom Bioinform. 2023 Jan 20;5(1):lqad004. doi: 10.1093/nargab/lqad004. eCollection 2023 Mar. NAR Genom Bioinform. 2023. PMID: 36685727 Free PMC article.

3

Divergent origins and concerted expansion of two segmental duplications on chromosome 16.

Eichler EE, Johnson ME, Alkan C, Tuzun E, Sahinalp C, Misceo D, Archidiacono N, Rocchi M. Eichler EE, et al. Among authors: alkan c. J Hered. 2001 Nov-Dec;92(6):462-8. doi: 10.1093/jhered/92.6.462. J Hered. 2001. PMID: 11948212

4

Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome.

Liu G; NISC Comparative Sequencing Program; Zhao S, Bailey JA, Sahinalp SC, Alkan C, Tuzun E, Green ED, Eichler EE. Liu G, et al. Among authors: alkan c. Genome Res. 2003 Mar;13(3):358-68. doi: 10.1101/gr.923303. Genome Res. 2003. PMID: 12618366 Free PMC article.

5

An algorithmic analysis of the role of unequal crossover in alpha-satellite DNA evolution.

Alkan C, Bailey JA, Eichler EE, Sahinalp SC, Tuzun E. Alkan C, et al. Genome Inform. 2002;13:93-102. Genome Inform. 2002. PMID: 14571378

6

The structure and evolution of centromeric transition regions within the human genome.

She X, Horvath JE, Jiang Z, Liu G, Furey TS, Christ L, Clark R, Graves T, Gulden CL, Alkan C, Bailey JA, Sahinalp C, Rocchi M, Haussler D, Wilson RK, Miller W, Schwartz S, Eichler EE. She X, et al. Among authors: alkan c. Nature. 2004 Aug 19;430(7002):857-64. doi: 10.1038/nature02806. Nature. 2004. PMID: 15318213

7

The role of unequal crossover in alpha-satellite DNA evolution: a computational analysis.

Alkan C, Eichler EE, Bailey JA, Sahinalp SC, Tüzün E. Alkan C, et al. J Comput Biol. 2004;11(5):933-44. doi: 10.1089/cmb.2004.11.933. J Comput Biol. 2004. PMID: 15700410

8

Manipulating multiple sequence alignments via MaM and WebMaM.

Alkan C, Tüzün E, Buard J, Lethiec F, Eichler EE, Bailey JA, Sahinalp SC. Alkan C, et al. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W295-8. doi: 10.1093/nar/gki406. Nucleic Acids Res. 2005. PMID: 15980474 Free PMC article.

9

RNA-RNA interaction prediction and antisense RNA target search.

Alkan C, Karakoç E, Nadeau JH, Sahinalp SC, Zhang K. Alkan C, et al. J Comput Biol. 2006 Mar;13(2):267-82. doi: 10.1089/cmb.2006.13.267. J Comput Biol. 2006. PMID: 16597239

10

Optimal design of oligonucleotide microarrays for measurement of DNA copy-number.

Sharp AJ, Itsara A, Cheng Z, Alkan C, Schwartz S, Eichler EE. Sharp AJ, et al. Among authors: alkan c. Hum Mol Genet. 2007 Nov 15;16(22):2770-9. doi: 10.1093/hmg/ddm234. Epub 2007 Aug 28. Hum Mol Genet. 2007. PMID: 17725982

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