Tsuda K - Search Results

1

EPIBLASTER-fast exhaustive two-locus epistasis detection strategy using graphical processing units.

Kam-Thong T, Czamara D, Tsuda K, Borgwardt K, Lewis CM, Erhardt-Lehmann A, Hemmer B, Rieckmann P, Daake M, Weber F, Wolf C, Ziegler A, Pütz B, Holsboer F, Schölkopf B, Müller-Myhsok B. Kam-Thong T, et al. Among authors: tsuda k. Eur J Hum Genet. 2011 Apr;19(4):465-71. doi: 10.1038/ejhg.2010.196. Epub 2010 Dec 8. Eur J Hum Genet. 2011. PMID: 21150885 Free PMC article.

2

Fast protein classification with multiple networks.

Tsuda K, Shin H, Schölkopf B. Tsuda K, et al. Bioinformatics. 2005 Sep 1;21 Suppl 2:ii59-65. doi: 10.1093/bioinformatics/bti1110. Bioinformatics. 2005. PMID: 16204126

3

Enumeration of condition-dependent dense modules in protein interaction networks.

Georgii E, Dietmann S, Uno T, Pagel P, Tsuda K. Georgii E, et al. Among authors: tsuda k. Bioinformatics. 2009 Apr 1;25(7):933-40. doi: 10.1093/bioinformatics/btp080. Epub 2009 Feb 11. Bioinformatics. 2009. PMID: 19213739 Free PMC article.

4

Learning kernels from biological networks by maximizing entropy.

Tsuda K, Noble WS. Tsuda K, et al. Bioinformatics. 2004 Aug 4;20 Suppl 1:i326-33. doi: 10.1093/bioinformatics/bth906. Bioinformatics. 2004. PMID: 15262816

5

Mining complex genotypic features for predicting HIV-1 drug resistance.

Saigo H, Uno T, Tsuda K. Saigo H, et al. Among authors: tsuda k. Bioinformatics. 2007 Sep 15;23(18):2455-62. doi: 10.1093/bioinformatics/btm353. Epub 2007 Aug 13. Bioinformatics. 2007. PMID: 17698858

6

LAMPLINK: detection of statistically significant SNP combinations from GWAS data.

Terada A, Yamada R, Tsuda K, Sese J. Terada A, et al. Among authors: tsuda k. Bioinformatics. 2016 Nov 15;32(22):3513-3515. doi: 10.1093/bioinformatics/btw418. Epub 2016 Jul 13. Bioinformatics. 2016. PMID: 27412093 Free PMC article.

7

Reaction graph kernels predict EC numbers of unknown enzymatic reactions in plant secondary metabolism.

Saigo H, Hattori M, Kashima H, Tsuda K. Saigo H, et al. Among authors: tsuda k. BMC Bioinformatics. 2010 Jan 18;11 Suppl 1(Suppl 1):S31. doi: 10.1186/1471-2105-11-S1-S31. BMC Bioinformatics. 2010. PMID: 20122204 Free PMC article.

8

On the performance of methods for finding a switching mechanism in gene expression.

Kayano M, Takigawa I, Shiga M, Tsuda K, Mamitsuka H. Kayano M, et al. Among authors: tsuda k. Genome Inform. 2010;24:69-83. Genome Inform. 2010. PMID: 22081590

9

Efficiently finding genome-wide three-way gene interactions from transcript- and genotype-data.

Kayano M, Takigawa I, Shiga M, Tsuda K, Mamitsuka H. Kayano M, et al. Among authors: tsuda k. Bioinformatics. 2009 Nov 1;25(21):2735-43. doi: 10.1093/bioinformatics/btp531. Epub 2009 Sep 7. Bioinformatics. 2009. PMID: 19736252 Free PMC article.

10

SlideSort: all pairs similarity search for short reads.

Shimizu K, Tsuda K. Shimizu K, et al. Among authors: tsuda k. Bioinformatics. 2011 Feb 15;27(4):464-70. doi: 10.1093/bioinformatics/btq677. Epub 2010 Dec 9. Bioinformatics. 2011. PMID: 21148542 Free PMC article.

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