Castelo R - Search Results

1

Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster.

Hartmann B, Castelo R, Miñana B, Peden E, Blanchette M, Rio DC, Singh R, Valcárcel J. Hartmann B, et al. Among authors: castelo r. RNA. 2011 Mar;17(3):453-68. doi: 10.1261/rna.2460411. Epub 2011 Jan 13. RNA. 2011. PMID: 21233220 Free PMC article.

2

Global analysis of alternative splicing regulation by insulin and wingless signaling in Drosophila cells.

Hartmann B, Castelo R, Blanchette M, Boue S, Rio DC, Valcárcel J. Hartmann B, et al. Among authors: castelo r. Genome Biol. 2009;10(1):R11. doi: 10.1186/gb-2009-10-1-r11. Epub 2009 Jan 29. Genome Biol. 2009. PMID: 19178699 Free PMC article.

3

Regulation of Fas alternative splicing by antagonistic effects of TIA-1 and PTB on exon definition.

Izquierdo JM, Majós N, Bonnal S, Martínez C, Castelo R, Guigó R, Bilbao D, Valcárcel J. Izquierdo JM, et al. Among authors: castelo r. Mol Cell. 2005 Aug 19;19(4):475-84. doi: 10.1016/j.molcel.2005.06.015. Mol Cell. 2005. PMID: 16109372 Free article.

4

Comparative gene finding in chicken indicates that we are closing in on the set of multi-exonic widely expressed human genes.

Castelo R, Reymond A, Wyss C, Câmara F, Parra G, Antonarakis SE, Guigó R, Eyras E. Castelo R, et al. Nucleic Acids Res. 2005 Apr 4;33(6):1935-9. doi: 10.1093/nar/gki328. Print 2005. Nucleic Acids Res. 2005. PMID: 15809229 Free PMC article.

5

EGASP: the human ENCODE Genome Annotation Assessment Project.

Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, Hubbard T, Lewis SE, Reese MG. Guigó R, et al. Among authors: castelo r. Genome Biol. 2006;7 Suppl 1(Suppl 1):S2.1-31. doi: 10.1186/gb-2006-7-s1-s2. Epub 2006 Aug 7. Genome Biol. 2006. PMID: 16925836 Free PMC article. Review.

6

Tandem chimerism as a means to increase protein complexity in the human genome.

Parra G, Reymond A, Dabbouseh N, Dermitzakis ET, Castelo R, Thomson TM, Antonarakis SE, Guigó R. Parra G, et al. Among authors: castelo r. Genome Res. 2006 Jan;16(1):37-44. doi: 10.1101/gr.4145906. Epub 2005 Dec 12. Genome Res. 2006. PMID: 16344564 Free PMC article.

7

Inference of regulatory networks from microarray data with R and the bioconductor package qpgraph.

Castelo R, Roverato A. Castelo R, et al. Methods Mol Biol. 2012;802:215-33. doi: 10.1007/978-1-61779-400-1_14. Methods Mol Biol. 2012. PMID: 22130883

8

GSVA: gene set variation analysis for microarray and RNA-seq data.

Hänzelmann S, Castelo R, Guinney J. Hänzelmann S, et al. Among authors: castelo r. BMC Bioinformatics. 2013 Jan 16;14:7. doi: 10.1186/1471-2105-14-7. BMC Bioinformatics. 2013. PMID: 23323831 Free PMC article.

9

Gene finding in the chicken genome.

Eyras E, Reymond A, Castelo R, Bye JM, Camara F, Flicek P, Huckle EJ, Parra G, Shteynberg DD, Wyss C, Rogers J, Antonarakis SE, Birney E, Guigo R, Brent MR. Eyras E, et al. Among authors: castelo r. BMC Bioinformatics. 2005 May 30;6:131. doi: 10.1186/1471-2105-6-131. BMC Bioinformatics. 2005. PMID: 15924626 Free PMC article.

10

Genome-wide postnatal changes in immunity following fetal inflammatory response.

Costa D, Bonet N, Solé A, González de Aledo-Castillo JM, Sabidó E, Casals F, Rovira C, Nadal A, Marin JL, Cobo T, Castelo R. Costa D, et al. Among authors: castelo r. FEBS J. 2021 Apr;288(7):2311-2331. doi: 10.1111/febs.15578. Epub 2020 Oct 24. FEBS J. 2021. PMID: 33006196 Free PMC article.

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