Strbenac D - Search Results

1

Discovery pipeline for epigenetically deregulated miRNAs in cancer: integration of primary miRNA transcription.

Hulf T, Sibbritt T, Wiklund ED, Bert S, Strbenac D, Statham AL, Robinson MD, Clark SJ. Hulf T, et al. Among authors: strbenac d. BMC Genomics. 2011 Jan 21;12:54. doi: 10.1186/1471-2164-12-54. BMC Genomics. 2011. PMID: 21255435 Free PMC article.

2

Acetylation of H2A.Z is a key epigenetic modification associated with gene deregulation and epigenetic remodeling in cancer.

Valdés-Mora F, Song JZ, Statham AL, Strbenac D, Robinson MD, Nair SS, Patterson KI, Tremethick DJ, Stirzaker C, Clark SJ. Valdés-Mora F, et al. Among authors: strbenac d. Genome Res. 2012 Feb;22(2):307-21. doi: 10.1101/gr.118919.110. Epub 2011 Jul 25. Genome Res. 2012. PMID: 21788347 Free PMC article.

3

Regional activation of the cancer genome by long-range epigenetic remodeling.

Bert SA, Robinson MD, Strbenac D, Statham AL, Song JZ, Hulf T, Sutherland RL, Coolen MW, Stirzaker C, Clark SJ. Bert SA, et al. Among authors: strbenac d. Cancer Cell. 2013 Jan 14;23(1):9-22. doi: 10.1016/j.ccr.2012.11.006. Epub 2012 Dec 13. Cancer Cell. 2013. PMID: 23245995 Free article.

4

Repitools: an R package for the analysis of enrichment-based epigenomic data.

Statham AL, Strbenac D, Coolen MW, Stirzaker C, Clark SJ, Robinson MD. Statham AL, et al. Among authors: strbenac d. Bioinformatics. 2010 Jul 1;26(13):1662-3. doi: 10.1093/bioinformatics/btq247. Epub 2010 May 10. Bioinformatics. 2010. PMID: 20457667 Free PMC article.

5

Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias.

Nair SS, Coolen MW, Stirzaker C, Song JZ, Statham AL, Strbenac D, Robinson MD, Clark SJ. Nair SS, et al. Among authors: strbenac d. Epigenetics. 2011 Jan;6(1):34-44. doi: 10.4161/epi.6.1.13313. Epub 2011 Jan 1. Epigenetics. 2011. PMID: 20818161 Free article.

6

Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation.

Robinson MD, Stirzaker C, Statham AL, Coolen MW, Song JZ, Nair SS, Strbenac D, Speed TP, Clark SJ. Robinson MD, et al. Among authors: strbenac d. Genome Res. 2010 Dec;20(12):1719-29. doi: 10.1101/gr.110601.110. Epub 2010 Nov 2. Genome Res. 2010. PMID: 21045081 Free PMC article.

7

Wnt inhibitory factor 1 (WIF1) is a marker of osteoblastic differentiation stage and is not silenced by DNA methylation in osteosarcoma.

Baker EK, Taylor S, Gupte A, Chalk AM, Bhattacharya S, Green AC, Martin TJ, Strbenac D, Robinson MD, Purton LE, Walkley CR. Baker EK, et al. Among authors: strbenac d. Bone. 2015 Apr;73:223-32. doi: 10.1016/j.bone.2014.12.063. Epub 2015 Jan 5. Bone. 2015. PMID: 25571841 Free article.

8

Copy-number-aware differential analysis of quantitative DNA sequencing data.

Robinson MD, Strbenac D, Stirzaker C, Statham AL, Song J, Speed TP, Clark SJ. Robinson MD, et al. Among authors: strbenac d. Genome Res. 2012 Dec;22(12):2489-96. doi: 10.1101/gr.139055.112. Epub 2012 Aug 9. Genome Res. 2012. PMID: 22879430 Free PMC article.

9

Targeting activating mutations of EZH2 leads to potent cell growth inhibition in human melanoma by derepression of tumor suppressor genes.

Tiffen JC, Gunatilake D, Gallagher SJ, Gowrishankar K, Heinemann A, Cullinane C, Dutton-Regester K, Pupo GM, Strbenac D, Yang JY, Madore J, Mann GJ, Hayward NK, McArthur GA, Filipp FV, Hersey P. Tiffen JC, et al. Among authors: strbenac d. Oncotarget. 2015 Sep 29;6(29):27023-36. doi: 10.18632/oncotarget.4809. Oncotarget. 2015. PMID: 26304929 Free PMC article.

10

Differential distribution improves gene selection stability and has competitive classification performance for patient survival.

Strbenac D, Mann GJ, Yang JY, Ormerod JT. Strbenac D, et al. Nucleic Acids Res. 2016 Jul 27;44(13):e119. doi: 10.1093/nar/gkw444. Epub 2016 May 17. Nucleic Acids Res. 2016. PMID: 27190235 Free PMC article.

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