Ioerger TR - Search Results

1

Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection.

Ford CB, Lin PL, Chase MR, Shah RR, Iartchouk O, Galagan J, Mohaideen N, Ioerger TR, Sacchettini JC, Lipsitch M, Flynn JL, Fortune SM. Ford CB, et al. Among authors: ioerger tr. Nat Genet. 2011 May;43(5):482-6. doi: 10.1038/ng.811. Epub 2011 Apr 24. Nat Genet. 2011. PMID: 21516081 Free PMC article.

2

Automatic modeling of protein backbones in electron-density maps via prediction of Calpha coordinates.

Ioerger TR, Sacchettini JC. Ioerger TR, et al. Acta Crystallogr D Biol Crystallogr. 2002 Dec;58(Pt 12):2043-54. doi: 10.1107/s0907444902016724. Epub 2002 Nov 23. Acta Crystallogr D Biol Crystallogr. 2002. PMID: 12454463

3

TEXTAL system: artificial intelligence techniques for automated protein model building.

Ioerger TR, Sacchettini JC. Ioerger TR, et al. Methods Enzymol. 2003;374:244-70. doi: 10.1016/S0076-6879(03)74012-9. Methods Enzymol. 2003. PMID: 14696377 No abstract available.

4

Determining relevant features to recognize electron density patterns in x-ray protein crystallography.

Gopal K, Romo TD, Sacchettini JC, Ioerger TR. Gopal K, et al. Among authors: ioerger tr. J Bioinform Comput Biol. 2005 Jun;3(3):645-76. doi: 10.1142/s0219720005001272. J Bioinform Comput Biol. 2005. PMID: 16108088

5

Weighting features to recognize 3D patterns of electron density in X-ray protein crystallography.

Gopal K, Romo TD, Sacchettini JC, Ioerger TR. Gopal K, et al. Among authors: ioerger tr. Proc IEEE Comput Syst Bioinform Conf. 2004:255-65. doi: 10.1109/csb.2004.1332439. Proc IEEE Comput Syst Bioinform Conf. 2004. PMID: 16448019

6

Identifying non-crystallographic symmetry in protein electron-density maps: a feature-based approach.

Pai R, Sacchettini J, Ioerger T. Pai R, et al. Acta Crystallogr D Biol Crystallogr. 2006 Sep;62(Pt 9):1012-21. doi: 10.1107/S0907444906023158. Epub 2006 Aug 19. Acta Crystallogr D Biol Crystallogr. 2006. PMID: 16929102

7

Improving amino-acid identification, fit and C(alpha) prediction using the Simplex method in automated model building.

Romo TD, Sacchettini JC, Ioerger TR. Romo TD, et al. Among authors: ioerger tr. Acta Crystallogr D Biol Crystallogr. 2006 Nov;62(Pt 11):1401-6. doi: 10.1107/S0907444906034019. Epub 2006 Oct 18. Acta Crystallogr D Biol Crystallogr. 2006. PMID: 17057345

8

Crystal structure of Mycobacterium tuberculosis LrpA, a leucine-responsive global regulator associated with starvation response.

Reddy MC, Gokulan K, Jacobs WR Jr, Ioerger TR, Sacchettini JC. Reddy MC, et al. Among authors: ioerger tr. Protein Sci. 2008 Jan;17(1):159-70. doi: 10.1110/ps.073192208. Epub 2007 Nov 27. Protein Sci. 2008. PMID: 18042675 Free PMC article.

9

The 1.25 A resolution structure of phosphoribosyl-ATP pyrophosphohydrolase from Mycobacterium tuberculosis.

Javid-Majd F, Yang D, Ioerger TR, Sacchettini JC. Javid-Majd F, et al. Among authors: ioerger tr. Acta Crystallogr D Biol Crystallogr. 2008 Jun;64(Pt 6):627-35. doi: 10.1107/S0907444908007105. Epub 2008 May 14. Acta Crystallogr D Biol Crystallogr. 2008. PMID: 18560150 Free PMC article.

10

Discovery of novel nitrobenzothiazole inhibitors for Mycobacterium tuberculosis ATP phosphoribosyl transferase (HisG) through virtual screening.

Cho Y, Ioerger TR, Sacchettini JC. Cho Y, et al. Among authors: ioerger tr. J Med Chem. 2008 Oct 9;51(19):5984-92. doi: 10.1021/jm800328v. Epub 2008 Sep 9. J Med Chem. 2008. PMID: 18778048 Free PMC article.

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