Baggerly KA - Search Results

1

Reproducibility of SELDI Spectra Across Time and Laboratories.

Diao L, Clarke CH, Coombes KR, Hamilton SR, Roth J, Mao L, Czerniak B, Baggerly KA, Morris JS, Fung ET, Bast RC Jr. Diao L, et al. Among authors: baggerly ka. Cancer Inform. 2011 Mar 14;10:45-64. doi: 10.4137/CIN.S6438. Cancer Inform. 2011. PMID: 21552492 Free PMC article.

2

Obtaining reliable information from minute amounts of RNA using cDNA microarrays.

Hu L, Wang J, Baggerly K, Wang H, Fuller GN, Hamilton SR, Coombes KR, Zhang W. Hu L, et al. BMC Genomics. 2002 Jun 21;3:16. doi: 10.1186/1471-2164-3-16. Epub 2002 Jun 21. BMC Genomics. 2002. PMID: 12086591 Free PMC article.

3

A comprehensive approach to the analysis of matrix-assisted laser desorption/ionization-time of flight proteomics spectra from serum samples.

Baggerly KA, Morris JS, Wang J, Gold D, Xiao LC, Coombes KR. Baggerly KA, et al. Proteomics. 2003 Sep;3(9):1667-72. doi: 10.1002/pmic.200300522. Proteomics. 2003. PMID: 12973722

4

Quality control and peak finding for proteomics data collected from nipple aspirate fluid by surface-enhanced laser desorption and ionization.

Coombes KR, Fritsche HA Jr, Clarke C, Chen JN, Baggerly KA, Morris JS, Xiao LC, Hung MC, Kuerer HM. Coombes KR, et al. Among authors: baggerly ka. Clin Chem. 2003 Oct;49(10):1615-23. doi: 10.1373/49.10.1615. Clin Chem. 2003. PMID: 14500586

5

Bayesian shrinkage estimation of the relative abundance of mRNA transcripts using SAGE.

Morris JS, Baggerly KA, Coombes KR. Morris JS, et al. Among authors: baggerly ka. Biometrics. 2003 Sep;59(3):476-86. doi: 10.1111/1541-0420.00057. Biometrics. 2003. PMID: 14601748

6

Reproducibility of SELDI-TOF protein patterns in serum: comparing datasets from different experiments.

Baggerly KA, Morris JS, Coombes KR. Baggerly KA, et al. Bioinformatics. 2004 Mar 22;20(5):777-85. doi: 10.1093/bioinformatics/btg484. Epub 2004 Jan 29. Bioinformatics. 2004. PMID: 14751995

7

Response to Preprocessing of oligonucleotide array data.

Zhang L, Wu C, Carta R, Baggerly K, Coombes KR. Zhang L, et al. Nat Biotechnol. 2004 Jun;22(6):658. doi: 10.1038/nbt0604-658. Nat Biotechnol. 2004. PMID: 15175679 No abstract available.

8

Overdispersed logistic regression for SAGE: modelling multiple groups and covariates.

Baggerly KA, Deng L, Morris JS, Aldaz CM. Baggerly KA, et al. BMC Bioinformatics. 2004 Oct 6;5:144. doi: 10.1186/1471-2105-5-144. BMC Bioinformatics. 2004. PMID: 15469612 Free PMC article.

9

High-resolution serum proteomic patterns for ovarian cancer detection.

Baggerly KA, Edmonson SR, Morris JS, Coombes KR. Baggerly KA, et al. Endocr Relat Cancer. 2004 Dec;11(4):583-4; author reply 585-7. doi: 10.1677/erc.1.00868. Endocr Relat Cancer. 2004. PMID: 15613439 No abstract available.

10

Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum.

Morris JS, Coombes KR, Koomen J, Baggerly KA, Kobayashi R. Morris JS, et al. Among authors: baggerly ka. Bioinformatics. 2005 May 1;21(9):1764-75. doi: 10.1093/bioinformatics/bti254. Epub 2005 Jan 26. Bioinformatics. 2005. PMID: 15673564 Clinical Trial.

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