Pehkonen P - Search Results

1

TAFFEL: Independent Enrichment Analysis of gene sets.

Kurki MI, Paananen J, Storvik M, Ylä-Herttuala S, Jääskeläinen JE, von Und Zu Fraunberg M, Wong G, Pehkonen P. Kurki MI, et al. Among authors: pehkonen p. BMC Bioinformatics. 2011 May 19;12:171. doi: 10.1186/1471-2105-12-171. BMC Bioinformatics. 2011. PMID: 21592412 Free PMC article.

2

Theme discovery from gene lists for identification and viewing of multiple functional groups.

Pehkonen P, Wong G, Törönen P. Pehkonen P, et al. BMC Bioinformatics. 2005 Jun 29;6:162. doi: 10.1186/1471-2105-6-162. BMC Bioinformatics. 2005. PMID: 15987504 Free PMC article.

3

Heuristic Bayesian segmentation for discovery of coexpressed genes within genomic regions.

Pehkonen P, Wong G, Törönen P. Pehkonen P, et al. IEEE/ACM Trans Comput Biol Bioinform. 2010 Jan-Mar;7(1):37-49. doi: 10.1109/TCBB.2008.56. IEEE/ACM Trans Comput Biol Bioinform. 2010. PMID: 20150667

4

POXO: a web-enabled tool series to discover transcription factor binding sites.

Kankainen M, Pehkonen P, Rosenstöm P, Törönen P, Wong G, Holm L. Kankainen M, et al. Among authors: pehkonen p. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W534-40. doi: 10.1093/nar/gkl296. Nucleic Acids Res. 2006. PMID: 16845065 Free PMC article.

5

Identification of gene expression changes in transgenic C. elegans overexpressing human alpha-synuclein.

Vartiainen S, Pehkonen P, Lakso M, Nass R, Wong G. Vartiainen S, et al. Among authors: pehkonen p. Neurobiol Dis. 2006 Jun;22(3):477-86. doi: 10.1016/j.nbd.2005.12.021. Epub 2006 Apr 19. Neurobiol Dis. 2006. PMID: 16626960

6

The unique characteristics of the placental transcriptome and the hormonal metabolism enzymes in placenta.

Storvik M, Huuskonen P, Pehkonen P, Pasanen M. Storvik M, et al. Among authors: pehkonen p. Reprod Toxicol. 2014 Aug;47:9-14. doi: 10.1016/j.reprotox.2014.04.010. Epub 2014 May 9. Reprod Toxicol. 2014. PMID: 24814680

7

Overexpression of SUMO perturbs the growth and development of Caenorhabditis elegans.

Rytinki MM, Lakso M, Pehkonen P, Aarnio V, Reisner K, Peräkylä M, Wong G, Palvimo JJ. Rytinki MM, et al. Among authors: pehkonen p. Cell Mol Life Sci. 2011 Oct;68(19):3219-32. doi: 10.1007/s00018-011-0627-4. Epub 2011 Jan 21. Cell Mol Life Sci. 2011. PMID: 21253676 Free PMC article.

8

Generation of Gene Ontology benchmark datasets with various types of positive signal.

Törönen P, Pehkonen P, Holm L. Törönen P, et al. Among authors: pehkonen p. BMC Bioinformatics. 2009 Oct 7;10:319. doi: 10.1186/1471-2105-10-319. BMC Bioinformatics. 2009. PMID: 19811632 Free PMC article.

9

Construction and use of gene expression covariation matrix.

Hennetin J, Pehkonen P, Bellis M. Hennetin J, et al. Among authors: pehkonen p. BMC Bioinformatics. 2009 Jul 13;10:214. doi: 10.1186/1471-2105-10-214. BMC Bioinformatics. 2009. PMID: 19594909 Free PMC article.

10

Genome-wide landscape of liver X receptor chromatin binding and gene regulation in human macrophages.

Pehkonen P, Welter-Stahl L, Diwo J, Ryynänen J, Wienecke-Baldacchino A, Heikkinen S, Treuter E, Steffensen KR, Carlberg C. Pehkonen P, et al. BMC Genomics. 2012 Jan 31;13:50. doi: 10.1186/1471-2164-13-50. BMC Genomics. 2012. PMID: 22292898 Free PMC article.

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