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Page 1
An integrated semiconductor device enabling non-optical genome sequencing.
Rothberg JM, Hinz W, Rearick TM, Schultz J, Mileski W, Davey M, Leamon JH, Johnson K, Milgrew MJ, Edwards M, Hoon J, Simons JF, Marran D, Myers JW, Davidson JF, Branting A, Nobile JR, Puc BP, Light D, Clark TA, Huber M, Branciforte JT, Stoner IB, Cawley SE, Lyons M, Fu Y, Homer N, Sedova M, Miao X, Reed B, Sabina J, Feierstein E, Schorn M, Alanjary M, Dimalanta E, Dressman D, Kasinskas R, Sokolsky T, Fidanza JA, Namsaraev E, McKernan KJ, Williams A, Roth GT, Bustillo J. Rothberg JM, et al. Among authors: dimalanta e. Nature. 2011 Jul 20;475(7356):348-52. doi: 10.1038/nature10242. Nature. 2011. PMID: 21776081
Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding.
McKernan KJ, Peckham HE, Costa GL, McLaughlin SF, Fu Y, Tsung EF, Clouser CR, Duncan C, Ichikawa JK, Lee CC, Zhang Z, Ranade SS, Dimalanta ET, Hyland FC, Sokolsky TD, Zhang L, Sheridan A, Fu H, Hendrickson CL, Li B, Kotler L, Stuart JR, Malek JA, Manning JM, Antipova AA, Perez DS, Moore MP, Hayashibara KC, Lyons MR, Beaudoin RE, Coleman BE, Laptewicz MW, Sannicandro AE, Rhodes MD, Gottimukkala RK, Yang S, Bafna V, Bashir A, MacBride A, Alkan C, Kidd JM, Eichler EE, Reese MG, De La Vega FM, Blanchard AP. McKernan KJ, et al. Among authors: dimalanta et. Genome Res. 2009 Sep;19(9):1527-41. doi: 10.1101/gr.091868.109. Epub 2009 Jun 22. Genome Res. 2009. PMID: 19546169 Free PMC article.
Genome sequence of enterohaemorrhagic Escherichia coli O157:H7.
Perna NT, Plunkett G 3rd, Burland V, Mau B, Glasner JD, Rose DJ, Mayhew GF, Evans PS, Gregor J, Kirkpatrick HA, Pósfai G, Hackett J, Klink S, Boutin A, Shao Y, Miller L, Grotbeck EJ, Davis NW, Lim A, Dimalanta ET, Potamousis KD, Apodaca J, Anantharaman TS, Lin J, Yen G, Schwartz DC, Welch RA, Blattner FR. Perna NT, et al. Among authors: dimalanta et. Nature. 2001 Jan 25;409(6819):529-33. doi: 10.1038/35054089. Nature. 2001. PMID: 11206551
A shotgun optical map of the entire Plasmodium falciparum genome.
Lai Z, Jing J, Aston C, Clarke V, Apodaca J, Dimalanta ET, Carucci DJ, Gardner MJ, Mishra B, Anantharaman TS, Paxia S, Hoffman SL, Craig Venter J, Huff EJ, Schwartz DC. Lai Z, et al. Among authors: dimalanta et. Nat Genet. 1999 Nov;23(3):309-13. doi: 10.1038/15484. Nat Genet. 1999. PMID: 10610179
Shotgun optical maps of the whole Escherichia coli O157:H7 genome.
Lim A, Dimalanta ET, Potamousis KD, Yen G, Apodoca J, Tao C, Lin J, Qi R, Skiadas J, Ramanathan A, Perna NT, Plunkett G 3rd, Burland V, Mau B, Hackett J, Blattner FR, Anantharaman TS, Mishra B, Schwartz DC. Lim A, et al. Among authors: dimalanta et. Genome Res. 2001 Sep;11(9):1584-93. doi: 10.1101/gr.172101. Genome Res. 2001. PMID: 11544203 Free PMC article.
Single-molecule approach to bacterial genomic comparisons via optical mapping.
Zhou S, Kile A, Bechner M, Place M, Kvikstad E, Deng W, Wei J, Severin J, Runnheim R, Churas C, Forrest D, Dimalanta ET, Lamers C, Burland V, Blattner FR, Schwartz DC. Zhou S, et al. Among authors: dimalanta et. J Bacteriol. 2004 Nov;186(22):7773-82. doi: 10.1128/JB.186.22.7773-7782.2004. J Bacteriol. 2004. PMID: 15516592 Free PMC article.
DNA dynamics in a microchannel.
Jendrejack RM, Dimalanta ET, Schwartz DC, Graham MD, de Pablo JJ. Jendrejack RM, et al. Phys Rev Lett. 2003 Jul 18;91(3):038102. doi: 10.1103/PhysRevLett.91.038102. Epub 2003 Jul 15. Phys Rev Lett. 2003. PMID: 12906459
Enzymatic methyl sequencing detects DNA methylation at single-base resolution from picograms of DNA.
Vaisvila R, Ponnaluri VKC, Sun Z, Langhorst BW, Saleh L, Guan S, Dai N, Campbell MA, Sexton BS, Marks K, Samaranayake M, Samuelson JC, Church HE, Tamanaha E, Corrêa IR Jr, Pradhan S, Dimalanta ET, Evans TC Jr, Williams L, Davis TB. Vaisvila R, et al. Among authors: dimalanta et. Genome Res. 2021 Jul;31(7):1280-1289. doi: 10.1101/gr.266551.120. Epub 2021 Jun 17. Genome Res. 2021. PMID: 34140313 Free PMC article.
A whole-genome shotgun optical map of Yersinia pestis strain KIM.
Zhou S, Deng W, Anantharaman TS, Lim A, Dimalanta ET, Wang J, Wu T, Chunhong T, Creighton R, Kile A, Kvikstad E, Bechner M, Yen G, Garic-Stankovic A, Severin J, Forrest D, Runnheim R, Churas C, Lamers C, Perna NT, Burland V, Blattner FR, Mishra B, Schwartz DC. Zhou S, et al. Among authors: dimalanta et. Appl Environ Microbiol. 2002 Dec;68(12):6321-31. doi: 10.1128/AEM.68.12.6321-6331.2002. Appl Environ Microbiol. 2002. PMID: 12450857 Free PMC article.
18 results