Chien CH - Search Results

1

Identifying transcriptional start sites of human microRNAs based on high-throughput sequencing data.

Chien CH, Sun YM, Chang WC, Chiang-Hsieh PY, Lee TY, Tsai WC, Horng JT, Tsou AP, Huang HD. Chien CH, et al. Nucleic Acids Res. 2011 Nov;39(21):9345-56. doi: 10.1093/nar/gkr604. Epub 2011 Aug 5. Nucleic Acids Res. 2011. PMID: 21821656 Free PMC article.

2

RegRNA: an integrated web server for identifying regulatory RNA motifs and elements.

Huang HY, Chien CH, Jen KH, Huang HD. Huang HY, et al. Among authors: chien ch. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W429-34. doi: 10.1093/nar/gkl333. Nucleic Acids Res. 2006. PMID: 16845041 Free PMC article.

3

miRTarBase: a database curates experimentally validated microRNA-target interactions.

Hsu SD, Lin FM, Wu WY, Liang C, Huang WC, Chan WL, Tsai WT, Chen GZ, Lee CJ, Chiu CM, Chien CH, Wu MC, Huang CY, Tsou AP, Huang HD. Hsu SD, et al. Among authors: chien ch. Nucleic Acids Res. 2011 Jan;39(Database issue):D163-9. doi: 10.1093/nar/gkq1107. Epub 2010 Nov 10. Nucleic Acids Res. 2011. PMID: 21071411 Free PMC article.

4

miRTar: an integrated system for identifying miRNA-target interactions in human.

Hsu JB, Chiu CM, Hsu SD, Huang WY, Chien CH, Lee TY, Huang HD. Hsu JB, et al. Among authors: chien ch. BMC Bioinformatics. 2011 Jul 26;12:300. doi: 10.1186/1471-2105-12-300. BMC Bioinformatics. 2011. PMID: 21791068 Free PMC article.

5

AlgaePath: comprehensive analysis of metabolic pathways using transcript abundance data from next-generation sequencing in green algae.

Zheng HQ, Chiang-Hsieh YF, Chien CH, Hsu BK, Liu TL, Chen CN, Chang WC. Zheng HQ, et al. Among authors: chien ch. BMC Genomics. 2014 Mar 14;15(1):196. doi: 10.1186/1471-2164-15-196. BMC Genomics. 2014. PMID: 24628857 Free PMC article.

6

Large-scale investigation of human TF-miRNA relations based on coexpression profiles.

Chien CH, Chiang-Hsieh YF, Tsou AP, Weng SL, Chang WC, Huang HD. Chien CH, et al. Biomed Res Int. 2014;2014:623078. doi: 10.1155/2014/623078. Epub 2014 Jun 9. Biomed Res Int. 2014. PMID: 24995316 Free PMC article.

7

EXPath: a database of comparative expression analysis inferring metabolic pathways for plants.

Chien CH, Chow CN, Wu NY, Chiang-Hsieh YF, Hou PF, Chang WC. Chien CH, et al. BMC Genomics. 2015;16 Suppl 2(Suppl 2):S6. doi: 10.1186/1471-2164-16-S2-S6. Epub 2015 Jan 21. BMC Genomics. 2015. PMID: 25708775 Free PMC article.

8

AtmiRNET: a web-based resource for reconstructing regulatory networks of Arabidopsis microRNAs.

Chien CH, Chiang-Hsieh YF, Chen YA, Chow CN, Wu NY, Hou PF, Chang WC. Chien CH, et al. Database (Oxford). 2015 May 13;2015:bav042. doi: 10.1093/database/bav042. Print 2015. Database (Oxford). 2015. PMID: 25972521 Free PMC article.

9

PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants.

Chow CN, Zheng HQ, Wu NY, Chien CH, Huang HD, Lee TY, Chiang-Hsieh YF, Hou PF, Yang TY, Chang WC. Chow CN, et al. Among authors: chien ch. Nucleic Acids Res. 2016 Jan 4;44(D1):D1154-60. doi: 10.1093/nar/gkv1035. Epub 2015 Oct 17. Nucleic Acids Res. 2016. PMID: 26476450 Free PMC article.

10

EXPath tool-a system for comprehensively analyzing regulatory pathways and coexpression networks from high-throughput transcriptome data.

Zheng HQ, Wu NY, Chow CN, Tseng KC, Chien CH, Hung YC, Li GZ, Chang WC. Zheng HQ, et al. Among authors: chien ch. DNA Res. 2017 Aug 1;24(4):371-375. doi: 10.1093/dnares/dsx009. DNA Res. 2017. PMID: 28338930 Free PMC article.

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