Prohaska SJ - Search Results

1

Protein-coding structured RNAs: A computational survey of conserved RNA secondary structures overlapping coding regions in drosophilids.

Findeiss S, Engelhardt J, Prohaska SJ, Stadler PF. Findeiss S, et al. Among authors: prohaska sj. Biochimie. 2011 Nov;93(11):2019-23. doi: 10.1016/j.biochi.2011.07.023. Epub 2011 Jul 31. Biochimie. 2011. PMID: 21835221

2

Substrate Affinity Versus Catalytic Efficiency: Ancestral Sequence Reconstruction of tRNA Nucleotidyltransferases Solves an Enzyme Puzzle.

Hager M, Pöhler MT, Reinhardt F, Wellner K, Hübner J, Betat H, Prohaska S, Mörl M. Hager M, et al. Mol Biol Evol. 2022 Dec 5;39(12):msac250. doi: 10.1093/molbev/msac250. Mol Biol Evol. 2022. PMID: 36409584 Free PMC article.

3

Independent Hox-cluster duplications in lampreys.

Fried C, Prohaska SJ, Stadler PF. Fried C, et al. Among authors: prohaska sj. J Exp Zool B Mol Dev Evol. 2003 Oct 15;299(1):18-25. doi: 10.1002/jez.b.37. J Exp Zool B Mol Dev Evol. 2003. PMID: 14508813

4

Bichir HoxA cluster sequence reveals surprising trends in ray-finned fish genomic evolution.

Chiu CH, Dewar K, Wagner GP, Takahashi K, Ruddle F, Ledje C, Bartsch P, Scemama JL, Stellwag E, Fried C, Prohaska SJ, Stadler PF, Amemiya CT. Chiu CH, et al. Among authors: prohaska sj. Genome Res. 2004 Jan;14(1):11-7. doi: 10.1101/gr.1712904. Genome Res. 2004. PMID: 14707166 Free PMC article.

5

The footprint sorting problem.

Fried C, Hordijk W, Prohaska SJ, Stadler CR, Stadler PF. Fried C, et al. Among authors: prohaska sj. J Chem Inf Comput Sci. 2004 Mar-Apr;44(2):332-8. doi: 10.1021/ci030411+. J Chem Inf Comput Sci. 2004. PMID: 15032508

6

The shark HoxN cluster is homologous to the human HoxD cluster.

Prohaska SJ, Fried C, Amemiya CT, Ruddle FH, Wagner GP, Stadler PF. Prohaska SJ, et al. J Mol Evol. 2004 Feb;58(2):212-7. doi: 10.1007/s00239-003-2545-z. J Mol Evol. 2004. PMID: 15042342

7

Exclusion of repetitive DNA elements from gnathostome Hox clusters.

Fried C, Prohaska SJ, Stadler PF. Fried C, et al. Among authors: prohaska sj. J Exp Zool B Mol Dev Evol. 2004 Mar 15;302(2):165-73. doi: 10.1002/jez.b.20007. J Exp Zool B Mol Dev Evol. 2004. PMID: 15054859

8

Surveying phylogenetic footprints in large gene clusters: applications to Hox cluster duplications.

Prohaska SJ, Fried C, Flamm C, Wagner GP, Stadler PF. Prohaska SJ, et al. Mol Phylogenet Evol. 2004 May;31(2):581-604. doi: 10.1016/j.ympev.2003.08.009. Mol Phylogenet Evol. 2004. PMID: 15062796

9

Divergence of conserved non-coding sequences: rate estimates and relative rate tests.

Wagner GP, Fried C, Prohaska SJ, Stadler PF. Wagner GP, et al. Among authors: prohaska sj. Mol Biol Evol. 2004 Nov;21(11):2116-21. doi: 10.1093/molbev/msh221. Epub 2004 Jul 28. Mol Biol Evol. 2004. PMID: 15282332

10

Evidence for independent Hox gene duplications in the hagfish lineage: a PCR-based gene inventory of Eptatretus stoutii.

Stadler PF, Fried C, Prohaska SJ, Bailey WJ, Misof BY, Ruddle FH, Wagner GP. Stadler PF, et al. Among authors: prohaska sj. Mol Phylogenet Evol. 2004 Sep;32(3):686-94. doi: 10.1016/j.ympev.2004.03.015. Mol Phylogenet Evol. 2004. PMID: 15288047

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