Lei C - Search Results

1

Genetic and genomic analyses of RNA polymerase II-pausing factor in regulation of mammalian transcription and cell growth.

Sun J, Pan H, Lei C, Yuan B, Nair SJ, April C, Parameswaran B, Klotzle B, Fan JB, Ruan J, Li R. Sun J, et al. Among authors: lei c. J Biol Chem. 2011 Oct 21;286(42):36248-57. doi: 10.1074/jbc.M111.269167. Epub 2011 Aug 24. J Biol Chem. 2011. PMID: 21865163 Free PMC article.

2

A novel swarm intelligence algorithm for finding DNA motifs.

Lei C, Ruan J. Lei C, et al. Int J Comput Biol Drug Des. 2009;2(4):323-39. doi: 10.1504/IJCBDD.2009.030764. Epub 2009 Jan 4. Int J Comput Biol Drug Des. 2009. PMID: 20090174 Free PMC article.

3

A novel link prediction algorithm for reconstructing protein-protein interaction networks by topological similarity.

Lei C, Ruan J. Lei C, et al. Bioinformatics. 2013 Feb 1;29(3):355-64. doi: 10.1093/bioinformatics/bts688. Epub 2012 Dec 11. Bioinformatics. 2013. PMID: 23235927 Free PMC article.

4

A particle swarm optimization-based algorithm for finding gapped motifs.

Lei C, Ruan J. Lei C, et al. BioData Min. 2010 Dec 13;3:9. doi: 10.1186/1756-0381-3-9. BioData Min. 2010. PMID: 21144057 Free PMC article.

5

Systematic identification of functional modules and cis-regulatory elements in Arabidopsis thaliana.

Ruan J, Perez J, Hernandez B, Lei C, Sunter G, Sponsel VM. Ruan J, et al. Among authors: lei c. BMC Bioinformatics. 2011 Nov 24;12 Suppl 12(Suppl 12):S2. doi: 10.1186/1471-2105-12-S12-S2. BMC Bioinformatics. 2011. PMID: 22168340 Free PMC article.

6

Robust edge-based biomarker discovery improves prediction of breast cancer metastasis.

Adnan N, Lei C, Ruan J. Adnan N, et al. Among authors: lei c. BMC Bioinformatics. 2020 Sep 30;21(Suppl 14):359. doi: 10.1186/s12859-020-03692-2. BMC Bioinformatics. 2020. PMID: 32998692 Free PMC article.

7

A novel algorithm for network-based prediction of cancer recurrence.

Ruan J, Jahid MJ, Gu F, Lei C, Huang YW, Hsu YT, Mutch DG, Chen CL, Kirma NB, Huang TH. Ruan J, et al. Among authors: lei c. Genomics. 2019 Jan;111(1):17-23. doi: 10.1016/j.ygeno.2016.07.005. Epub 2016 Jul 21. Genomics. 2019. PMID: 27453286 Free PMC article.

8

Fully automated protein complex prediction based on topological similarity and community structure.

Lei C, Tamim S, Bishop AJ, Ruan J. Lei C, et al. Proteome Sci. 2013 Nov 7;11(Suppl 1):S9. doi: 10.1186/1477-5956-11-S1-S9. Epub 2013 Nov 7. Proteome Sci. 2013. PMID: 24564887 Free PMC article.

9

Evaluation of methods for modeling transcription factor sequence specificity.

Weirauch MT, Cote A, Norel R, Annala M, Zhao Y, Riley TR, Saez-Rodriguez J, Cokelaer T, Vedenko A, Talukder S; DREAM5 Consortium; Bussemaker HJ, Morris QD, Bulyk ML, Stolovitzky G, Hughes TR. Weirauch MT, et al. Nat Biotechnol. 2013 Feb;31(2):126-34. doi: 10.1038/nbt.2486. Epub 2013 Jan 27. Nat Biotechnol. 2013. PMID: 23354101 Free PMC article.

10

The impact of metabolic component count on IgA nephropathy prognosis.

Ma H, Lei C, Zhao B, Feng Z, Ye L, Wang X, Zhou X. Ma H, et al. Among authors: lei c. Sci Rep. 2024 Dec 28;14(1):30996. doi: 10.1038/s41598-024-81929-3. Sci Rep. 2024. PMID: 39730781 Free article.

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