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SpeCond: a method to detect condition-specific gene expression.
Cavalli FM, Bourgon R, Vaquerizas JM, Luscombe NM. Cavalli FM, et al. Among authors: bourgon r. Genome Biol. 2011 Oct 18;12(10):R101. doi: 10.1186/gb-2011-12-10-r101. Genome Biol. 2011. PMID: 22008066 Free PMC article.
Genome-wide allele- and strand-specific expression profiling.
Gagneur J, Sinha H, Perocchi F, Bourgon R, Huber W, Steinmetz LM. Gagneur J, et al. Among authors: bourgon r. Mol Syst Biol. 2009;5:274. doi: 10.1038/msb.2009.31. Epub 2009 Jun 16. Mol Syst Biol. 2009. PMID: 19536197 Free PMC article.
gCMAP: user-friendly connectivity mapping with R.
Sandmann T, Kummerfeld SK, Gentleman R, Bourgon R. Sandmann T, et al. Among authors: bourgon r. Bioinformatics. 2014 Jan 1;30(1):127-8. doi: 10.1093/bioinformatics/btt592. Epub 2013 Oct 15. Bioinformatics. 2014. PMID: 24132929
Querying genomic databases: refining the connectivity map.
Segal MR, Xiong H, Bengtsson H, Bourgon R, Gentleman R. Segal MR, et al. Among authors: bourgon r. Stat Appl Genet Mol Biol. 2012 Jan 6;11(2):/j/sagmb.2012.11.issue-2/1544-6115.1715/1544-6115.1715.xml. doi: 10.2202/1544-6115.1715. Stat Appl Genet Mol Biol. 2012. PMID: 22499690
Comprehensive genomic analysis identifies SOX2 as a frequently amplified gene in small-cell lung cancer.
Rudin CM, Durinck S, Stawiski EW, Poirier JT, Modrusan Z, Shames DS, Bergbower EA, Guan Y, Shin J, Guillory J, Rivers CS, Foo CK, Bhatt D, Stinson J, Gnad F, Haverty PM, Gentleman R, Chaudhuri S, Janakiraman V, Jaiswal BS, Parikh C, Yuan W, Zhang Z, Koeppen H, Wu TD, Stern HM, Yauch RL, Huffman KE, Paskulin DD, Illei PB, Varella-Garcia M, Gazdar AF, de Sauvage FJ, Bourgon R, Minna JD, Brock MV, Seshagiri S. Rudin CM, et al. Among authors: bourgon r. Nat Genet. 2012 Oct;44(10):1111-6. doi: 10.1038/ng.2405. Epub 2012 Sep 2. Nat Genet. 2012. PMID: 22941189 Free PMC article.
Recurrent R-spondin fusions in colon cancer.
Seshagiri S, Stawiski EW, Durinck S, Modrusan Z, Storm EE, Conboy CB, Chaudhuri S, Guan Y, Janakiraman V, Jaiswal BS, Guillory J, Ha C, Dijkgraaf GJ, Stinson J, Gnad F, Huntley MA, Degenhardt JD, Haverty PM, Bourgon R, Wang W, Koeppen H, Gentleman R, Starr TK, Zhang Z, Largaespada DA, Wu TD, de Sauvage FJ. Seshagiri S, et al. Among authors: bourgon r. Nature. 2012 Aug 30;488(7413):660-4. doi: 10.1038/nature11282. Nature. 2012. PMID: 22895193 Free PMC article.
56 results