Battenhouse A - Search Results

1

Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells.

Lee BK, Bhinge AA, Battenhouse A, McDaniell RM, Liu Z, Song L, Ni Y, Birney E, Lieb JD, Furey TS, Crawford GE, Iyer VR. Lee BK, et al. Among authors: battenhouse a. Genome Res. 2012 Jan;22(1):9-24. doi: 10.1101/gr.127597.111. Epub 2011 Nov 16. Genome Res. 2012. PMID: 22090374 Free PMC article.

2

Heritable individual-specific and allele-specific chromatin signatures in humans.

McDaniell R, Lee BK, Song L, Liu Z, Boyle AP, Erdos MR, Scott LJ, Morken MA, Kucera KS, Battenhouse A, Keefe D, Collins FS, Willard HF, Lieb JD, Furey TS, Crawford GE, Iyer VR, Birney E. McDaniell R, et al. Among authors: battenhouse a. Science. 2010 Apr 9;328(5975):235-9. doi: 10.1126/science.1184655. Epub 2010 Mar 18. Science. 2010. PMID: 20299549 Free PMC article.

3

A user's guide to the encyclopedia of DNA elements (ENCODE).

ENCODE Project Consortium. ENCODE Project Consortium. PLoS Biol. 2011 Apr;9(4):e1001046. doi: 10.1371/journal.pbio.1001046. Epub 2011 Apr 19. PLoS Biol. 2011. PMID: 21526222 Free PMC article.

4

Simultaneous SNP identification and assessment of allele-specific bias from ChIP-seq data.

Ni Y, Hall AW, Battenhouse A, Iyer VR. Ni Y, et al. Among authors: battenhouse a. BMC Genet. 2012 Sep 5;13:46. doi: 10.1186/1471-2156-13-46. BMC Genet. 2012. PMID: 22950704 Free PMC article.

5

An integrated encyclopedia of DNA elements in the human genome.

ENCODE Project Consortium. ENCODE Project Consortium. Nature. 2012 Sep 6;489(7414):57-74. doi: 10.1038/nature11247. Nature. 2012. PMID: 22955616 Free PMC article.

6

Simultaneous mapping of transcript ends at single-nucleotide resolution and identification of widespread promoter-associated non-coding RNA governed by TATA elements.

Park D, Morris AR, Battenhouse A, Iyer VR. Park D, et al. Among authors: battenhouse a. Nucleic Acids Res. 2014 Apr;42(6):3736-49. doi: 10.1093/nar/gkt1366. Epub 2014 Jan 10. Nucleic Acids Res. 2014. PMID: 24413663 Free PMC article.

7

Quantitative genetics of CTCF binding reveal local sequence effects and different modes of X-chromosome association.

Ding Z, Ni Y, Timmer SW, Lee BK, Battenhouse A, Louzada S, Yang F, Dunham I, Crawford GE, Lieb JD, Durbin R, Iyer VR, Birney E. Ding Z, et al. Among authors: battenhouse a. PLoS Genet. 2014 Nov 20;10(11):e1004798. doi: 10.1371/journal.pgen.1004798. eCollection 2014 Nov. PLoS Genet. 2014. PMID: 25411781 Free PMC article.

8

Correction: Quantitative genetics of CTCF binding reveal local sequence effects and different modes of X-chromosome association.

Ding Z, Ni Y, Timmer SW, Lee BK, Battenhouse A, Louzada S, Yang F, Dunham I, Crawford GE, Lieb JD, Durbin R, Iyer VR, Birney E. Ding Z, et al. Among authors: battenhouse a. PLoS Genet. 2015 Apr 28;11(4):e1005177. doi: 10.1371/journal.pgen.1005177. eCollection 2015 Apr. PLoS Genet. 2015. PMID: 25919664 Free PMC article.

9

Bivalent Chromatin Domains in Glioblastoma Reveal a Subtype-Specific Signature of Glioma Stem Cells.

Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR. Hall AW, et al. Cancer Res. 2018 May 15;78(10):2463-2474. doi: 10.1158/0008-5472.CAN-17-1724. Epub 2018 Mar 16. Cancer Res. 2018. PMID: 29549165 Free PMC article.

10

Detection and benchmarking of somatic mutations in cancer genomes using RNA-seq data.

Coudray A, Battenhouse AM, Bucher P, Iyer VR. Coudray A, et al. Among authors: battenhouse am. PeerJ. 2018 Jul 31;6:e5362. doi: 10.7717/peerj.5362. eCollection 2018. PeerJ. 2018. PMID: 30083469 Free PMC article.

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