Gonnet GH - Search Results

1

ALF--a simulation framework for genome evolution.

Dalquen DA, Anisimova M, Gonnet GH, Dessimoz C. Dalquen DA, et al. Among authors: gonnet gh. Mol Biol Evol. 2012 Apr;29(4):1115-23. doi: 10.1093/molbev/msr268. Epub 2011 Dec 8. Mol Biol Evol. 2012. PMID: 22160766 Free PMC article.

2

The impact of gene duplication, insertion, deletion, lateral gene transfer and sequencing error on orthology inference: a simulation study.

Dalquen DA, Altenhoff AM, Gonnet GH, Dessimoz C. Dalquen DA, et al. Among authors: gonnet gh. PLoS One. 2013;8(2):e56925. doi: 10.1371/journal.pone.0056925. Epub 2013 Feb 25. PLoS One. 2013. PMID: 23451112 Free PMC article.

3

A dimensionless fit measure for phylogenetic distance trees.

Gil M, Dessimoz C, Gonnet GH. Gil M, et al. Among authors: gonnet gh. J Bioinform Comput Biol. 2005 Dec;3(6):1429-40. doi: 10.1142/s0219720005001636. J Bioinform Comput Biol. 2005. PMID: 16374915

4

Detecting non-orthology in the COGs database and other approaches grouping orthologs using genome-specific best hits.

Dessimoz C, Boeckmann B, Roth AC, Gonnet GH. Dessimoz C, et al. Among authors: gonnet gh. Nucleic Acids Res. 2006 Jul 11;34(11):3309-16. doi: 10.1093/nar/gkl433. Print 2006. Nucleic Acids Res. 2006. PMID: 16835308 Free PMC article.

5

Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequences.

Dessimoz C, Gil M, Schneider A, Gonnet GH. Dessimoz C, et al. Among authors: gonnet gh. BMC Bioinformatics. 2006 Dec 5;7:529. doi: 10.1186/1471-2105-7-529. BMC Bioinformatics. 2006. PMID: 17147817 Free PMC article.

6

OMA Browser--exploring orthologous relations across 352 complete genomes.

Schneider A, Dessimoz C, Gonnet GH. Schneider A, et al. Among authors: gonnet gh. Bioinformatics. 2007 Aug 15;23(16):2180-2. doi: 10.1093/bioinformatics/btm295. Epub 2007 Jun 1. Bioinformatics. 2007. PMID: 17545180

7

Algorithm of OMA for large-scale orthology inference.

Roth AC, Gonnet GH, Dessimoz C. Roth AC, et al. Among authors: gonnet gh. BMC Bioinformatics. 2008 Dec 4;9:518. doi: 10.1186/1471-2105-9-518. BMC Bioinformatics. 2008. PMID: 19055798 Free PMC article.

8

OMA 2011: orthology inference among 1000 complete genomes.

Altenhoff AM, Schneider A, Gonnet GH, Dessimoz C. Altenhoff AM, et al. Among authors: gonnet gh. Nucleic Acids Res. 2011 Jan;39(Database issue):D289-94. doi: 10.1093/nar/gkq1238. Epub 2010 Nov 27. Nucleic Acids Res. 2011. PMID: 21113020 Free PMC article.

9

Inferring hierarchical orthologous groups from orthologous gene pairs.

Altenhoff AM, Gil M, Gonnet GH, Dessimoz C. Altenhoff AM, et al. Among authors: gonnet gh. PLoS One. 2013;8(1):e53786. doi: 10.1371/journal.pone.0053786. Epub 2013 Jan 14. PLoS One. 2013. PMID: 23342000 Free PMC article.

10

Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference.

Train CM, Glover NM, Gonnet GH, Altenhoff AM, Dessimoz C. Train CM, et al. Among authors: gonnet gh. Bioinformatics. 2017 Jul 15;33(14):i75-i82. doi: 10.1093/bioinformatics/btx229. Bioinformatics. 2017. PMID: 28881964 Free PMC article.

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