Yaffe E - Search Results

1

Three-dimensional folding and functional organization principles of the Drosophila genome.

Sexton T, Yaffe E, Kenigsberg E, Bantignies F, Leblanc B, Hoichman M, Parrinello H, Tanay A, Cavalli G. Sexton T, et al. Among authors: yaffe e. Cell. 2012 Feb 3;148(3):458-72. doi: 10.1016/j.cell.2012.01.010. Epub 2012 Jan 19. Cell. 2012. PMID: 22265598 Free article.

2

Cooperativity, specificity, and evolutionary stability of Polycomb targeting in Drosophila.

Schuettengruber B, Oded Elkayam N, Sexton T, Entrevan M, Stern S, Thomas A, Yaffe E, Parrinello H, Tanay A, Cavalli G. Schuettengruber B, et al. Among authors: yaffe e. Cell Rep. 2014 Oct 9;9(1):219-233. doi: 10.1016/j.celrep.2014.08.072. Epub 2014 Oct 2. Cell Rep. 2014. PMID: 25284790 Free article.

3

Chromosome folding: driver or passenger of epigenetic state?

Sexton T, Yaffe E. Sexton T, et al. Among authors: yaffe e. Cold Spring Harb Perspect Biol. 2015 Feb 2;7(2):a018721. doi: 10.1101/cshperspect.a018721. Cold Spring Harb Perspect Biol. 2015. PMID: 25646381 Free PMC article. Review.

4

Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture.

Yaffe E, Tanay A. Yaffe E, et al. Nat Genet. 2011 Oct 16;43(11):1059-65. doi: 10.1038/ng.947. Nat Genet. 2011. PMID: 22001755

5

Single-cell Hi-C reveals cell-to-cell variability in chromosome structure.

Nagano T, Lubling Y, Stevens TJ, Schoenfelder S, Yaffe E, Dean W, Laue ED, Tanay A, Fraser P. Nagano T, et al. Among authors: yaffe e. Nature. 2013 Oct 3;502(7469):59-64. doi: 10.1038/nature12593. Epub 2013 Sep 25. Nature. 2013. PMID: 24067610 Free PMC article.

6

Single-cell Hi-C for genome-wide detection of chromatin interactions that occur simultaneously in a single cell.

Nagano T, Lubling Y, Yaffe E, Wingett SW, Dean W, Tanay A, Fraser P. Nagano T, et al. Among authors: yaffe e. Nat Protoc. 2015 Dec;10(12):1986-2003. doi: 10.1038/nprot.2015.127. Epub 2015 Nov 5. Nat Protoc. 2015. PMID: 26540590

7

Comparative analysis of DNA replication timing reveals conserved large-scale chromosomal architecture.

Yaffe E, Farkash-Amar S, Polten A, Yakhini Z, Tanay A, Simon I. Yaffe E, et al. PLoS Genet. 2010 Jul 1;6(7):e1001011. doi: 10.1371/journal.pgen.1001011. PLoS Genet. 2010. PMID: 20617169 Free PMC article.

8

Cohesin-mediated interactions organize chromosomal domain architecture.

Sofueva S, Yaffe E, Chan WC, Georgopoulou D, Vietri Rudan M, Mira-Bontenbal H, Pollard SM, Schroth GP, Tanay A, Hadjur S. Sofueva S, et al. Among authors: yaffe e. EMBO J. 2013 Dec 11;32(24):3119-29. doi: 10.1038/emboj.2013.237. Epub 2013 Nov 1. EMBO J. 2013. PMID: 24185899 Free PMC article.

9

Tracking microbial evolution in the human gut using Hi-C reveals extensive horizontal gene transfer, persistence and adaptation.

Yaffe E, Relman DA. Yaffe E, et al. Nat Microbiol. 2020 Feb;5(2):343-353. doi: 10.1038/s41564-019-0625-0. Epub 2019 Dec 23. Nat Microbiol. 2020. PMID: 31873203 Free PMC article.

10

Precise genotyping of circular mobile elements from metagenomic data uncovers human-associated plasmids with recent common ancestors.

Shalon N, Relman DA, Yaffe E. Shalon N, et al. Among authors: yaffe e. Genome Res. 2022 May;32(5):986-1003. doi: 10.1101/gr.275894.121. Epub 2022 Apr 12. Genome Res. 2022. PMID: 35414589 Free PMC article.

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