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RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.
Cruz JA, Blanchet MF, Boniecki M, Bujnicki JM, Chen SJ, Cao S, Das R, Ding F, Dokholyan NV, Flores SC, Huang L, Lavender CA, Lisi V, Major F, Mikolajczak K, Patel DJ, Philips A, Puton T, Santalucia J, Sijenyi F, Hermann T, Rother K, Rother M, Serganov A, Skorupski M, Soltysinski T, Sripakdeevong P, Tuszynska I, Weeks KM, Waldsich C, Wildauer M, Leontis NB, Westhof E. Cruz JA, et al. Among authors: tuszynska i. RNA. 2012 Apr;18(4):610-25. doi: 10.1261/rna.031054.111. Epub 2012 Feb 23. RNA. 2012. PMID: 22361291 Free PMC article.
Computational methods for prediction of protein-RNA interactions.
Puton T, Kozlowski L, Tuszynska I, Rother K, Bujnicki JM. Puton T, et al. Among authors: tuszynska i. J Struct Biol. 2012 Sep;179(3):261-8. doi: 10.1016/j.jsb.2011.10.001. Epub 2011 Oct 12. J Struct Biol. 2012. PMID: 22019768 Review.
NPDock: a web server for protein-nucleic acid docking.
Tuszynska I, Magnus M, Jonak K, Dawson W, Bujnicki JM. Tuszynska I, et al. Nucleic Acids Res. 2015 Jul 1;43(W1):W425-30. doi: 10.1093/nar/gkv493. Epub 2015 May 14. Nucleic Acids Res. 2015. PMID: 25977296 Free PMC article.
Computational modeling of protein-RNA complex structures.
Tuszynska I, Matelska D, Magnus M, Chojnowski G, Kasprzak JM, Kozlowski LP, Dunin-Horkawicz S, Bujnicki JM. Tuszynska I, et al. Methods. 2014 Feb;65(3):310-9. doi: 10.1016/j.ymeth.2013.09.014. Epub 2013 Sep 29. Methods. 2014. PMID: 24083976 Review.
20 results