Gaidatzis D - Search Results

1

Tyrosine phosphatase SHP2 promotes breast cancer progression and maintains tumor-initiating cells via activation of key transcription factors and a positive feedback signaling loop.

Aceto N, Sausgruber N, Brinkhaus H, Gaidatzis D, Martiny-Baron G, Mazzarol G, Confalonieri S, Quarto M, Hu G, Balwierz PJ, Pachkov M, Elledge SJ, van Nimwegen E, Stadler MB, Bentires-Alj M. Aceto N, et al. Among authors: gaidatzis d. Nat Med. 2012 Mar 4;18(4):529-37. doi: 10.1038/nm.2645. Nat Med. 2012. PMID: 22388088

2

Inference of miRNA targets using evolutionary conservation and pathway analysis.

Gaidatzis D, van Nimwegen E, Hausser J, Zavolan M. Gaidatzis D, et al. BMC Bioinformatics. 2007 Mar 1;8:69. doi: 10.1186/1471-2105-8-69. BMC Bioinformatics. 2007. PMID: 17331257 Free PMC article.

3

Computational analysis of small RNA cloning data.

Berninger P, Gaidatzis D, van Nimwegen E, Zavolan M. Berninger P, et al. Among authors: gaidatzis d. Methods. 2008 Jan;44(1):13-21. doi: 10.1016/j.ymeth.2007.10.002. Methods. 2008. PMID: 18158128 Review.

4

Overestimation of alternative splicing caused by variable probe characteristics in exon arrays.

Gaidatzis D, Jacobeit K, Oakeley EJ, Stadler MB. Gaidatzis D, et al. Nucleic Acids Res. 2009 Sep;37(16):e107. doi: 10.1093/nar/gkp508. Epub 2009 Jun 15. Nucleic Acids Res. 2009. PMID: 19528075 Free PMC article.

5

Genomic prevalence of heterochromatic H3K9me2 and transcription do not discriminate pluripotent from terminally differentiated cells.

Lienert F, Mohn F, Tiwari VK, Baubec T, Roloff TC, Gaidatzis D, Stadler MB, Schübeler D. Lienert F, et al. Among authors: gaidatzis d. PLoS Genet. 2011 Jun;7(6):e1002090. doi: 10.1371/journal.pgen.1002090. Epub 2011 Jun 2. PLoS Genet. 2011. PMID: 21655081 Free PMC article.

6

DNA-binding factors shape the mouse methylome at distal regulatory regions.

Stadler MB, Murr R, Burger L, Ivanek R, Lienert F, Schöler A, van Nimwegen E, Wirbelauer C, Oakeley EJ, Gaidatzis D, Tiwari VK, Schübeler D. Stadler MB, et al. Among authors: gaidatzis d. Nature. 2011 Dec 14;480(7378):490-5. doi: 10.1038/nature10716. Nature. 2011. PMID: 22170606

7

Transcriptional code and disease map for adult retinal cell types.

Siegert S, Cabuy E, Scherf BG, Kohler H, Panda S, Le YZ, Fehling HJ, Gaidatzis D, Stadler MB, Roska B. Siegert S, et al. Among authors: gaidatzis d. Nat Neurosci. 2012 Jan 22;15(3):487-95, S1-2. doi: 10.1038/nn.3032. Nat Neurosci. 2012. PMID: 22267162

8

Chromatin measurements reveal contributions of synthesis and decay to steady-state mRNA levels.

Tippmann SC, Ivanek R, Gaidatzis D, Schöler A, Hoerner L, van Nimwegen E, Stadler PF, Stadler MB, Schübeler D. Tippmann SC, et al. Among authors: gaidatzis d. Mol Syst Biol. 2012 Jul 17;8:593. doi: 10.1038/msb.2012.23. Mol Syst Biol. 2012. PMID: 22806141 Free PMC article.

9

Identification of active regulatory regions from DNA methylation data.

Burger L, Gaidatzis D, Schübeler D, Stadler MB. Burger L, et al. Among authors: gaidatzis d. Nucleic Acids Res. 2013 Sep;41(16):e155. doi: 10.1093/nar/gkt599. Epub 2013 Jul 4. Nucleic Acids Res. 2013. PMID: 23828043 Free PMC article.

10

Confero: an integrated contrast data and gene set platform for computational analysis and biological interpretation of omics data.

Hermida L, Poussin C, Stadler MB, Gubian S, Sewer A, Gaidatzis D, Hotz HR, Martin F, Belcastro V, Cano S, Peitsch MC, Hoeng J. Hermida L, et al. Among authors: gaidatzis d. BMC Genomics. 2013 Jul 29;14:514. doi: 10.1186/1471-2164-14-514. BMC Genomics. 2013. PMID: 23895370 Free PMC article.

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