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Ontology searching and browsing at the Rat Genome Database.
Laulederkind SJ, Tutaj M, Shimoyama M, Hayman GT, Lowry TF, Nigam R, Petri V, Smith JR, Wang SJ, de Pons J, Dwinell MR, Jacob HJ. Laulederkind SJ, et al. Among authors: nigam r. Database (Oxford). 2012 Mar 20;2012:bas016. doi: 10.1093/database/bas016. Print 2012. Database (Oxford). 2012. PMID: 22434847 Free PMC article.
Rat Genome Database (RGD): mapping disease onto the genome.
Twigger S, Lu J, Shimoyama M, Chen D, Pasko D, Long H, Ginster J, Chen CF, Nigam R, Kwitek A, Eppig J, Maltais L, Maglott D, Schuler G, Jacob H, Tonellato PJ. Twigger S, et al. Among authors: nigam r. Nucleic Acids Res. 2002 Jan 1;30(1):125-8. doi: 10.1093/nar/30.1.125. Nucleic Acids Res. 2002. PMID: 11752273 Free PMC article.
The Rat Genome Database (RGD): developments towards a phenome database.
de la Cruz N, Bromberg S, Pasko D, Shimoyama M, Twigger S, Chen J, Chen CF, Fan C, Foote C, Gopinath GR, Harris G, Hughes A, Ji Y, Jin W, Li D, Mathis J, Nenasheva N, Nie J, Nigam R, Petri V, Reilly D, Wang W, Wu W, Zuniga-Meyer A, Zhao L, Kwitek A, Tonellato P, Jacob H. de la Cruz N, et al. Among authors: nigam r. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D485-91. doi: 10.1093/nar/gki050. Nucleic Acids Res. 2005. PMID: 15608243 Free PMC article.
Tools and strategies for physiological genomics: the Rat Genome Database.
Twigger SN, Pasko D, Nie J, Shimoyama M, Bromberg S, Campbell D, Chen J, dela Cruz N, Fan C, Foote C, Harris G, Hickmann B, Ji Y, Jin W, Li D, Mathis J, Nenasheva N, Nigam R, Petri V, Reilly D, Ruotti V, Schauberger E, Seiler K, Slyper R, Smith J, Wang W, Wu W, Zhao L, Zuniga-Meyer A, Tonellato PJ, Kwitek AE, Jacob HJ. Twigger SN, et al. Among authors: nigam r. Physiol Genomics. 2005 Oct 17;23(2):246-56. doi: 10.1152/physiolgenomics.00040.2005. Epub 2005 Aug 16. Physiol Genomics. 2005. PMID: 16106031 Free PMC article.
The rat genome database curators: who, what, where, why.
Shimoyama M, Hayman GT, Laulederkind SJ, Nigam R, Lowry TF, Petri V, Smith JR, Wang SJ, Munzenmaier DH, Dwinell MR, Twigger SN, Jacob HJ; RGD Team. Shimoyama M, et al. Among authors: nigam r. PLoS Comput Biol. 2009 Nov;5(11):e1000582. doi: 10.1371/journal.pcbi.1000582. Epub 2009 Nov 26. PLoS Comput Biol. 2009. PMID: 19956751 Free PMC article. No abstract available.
RGD: a comparative genomics platform.
Shimoyama M, Smith JR, Hayman T, Laulederkind S, Lowry T, Nigam R, Petri V, Wang SJ, Dwinell M, Jacob H; RGD Team. Shimoyama M, et al. Among authors: nigam r. Hum Genomics. 2011 Jan;5(2):124-9. doi: 10.1186/1479-7364-5-2-124. Hum Genomics. 2011. PMID: 21296746 Free PMC article.
The Rat Genome Database curation tool suite: a set of optimized software tools enabling efficient acquisition, organization, and presentation of biological data.
Laulederkind SJ, Shimoyama M, Hayman GT, Lowry TF, Nigam R, Petri V, Smith JR, Wang SJ, de Pons J, Kowalski G, Liu W, Rood W, Munzenmaier DH, Dwinell MR, Twigger SN, Jacob HJ; RGD Team. Laulederkind SJ, et al. Among authors: nigam r. Database (Oxford). 2011 Feb 14;2011:bar002. doi: 10.1093/database/bar002. Print 2011. Database (Oxford). 2011. PMID: 21321022 Free PMC article.
Exploring genetic, genomic, and phenotypic data at the rat genome database.
Laulederkind SJF, Hayman GT, Wang SJ, Lowry TF, Nigam R, Petri V, Smith JR, Dwinell MR, Jacob HJ, Shimoyama M. Laulederkind SJF, et al. Among authors: nigam r. Curr Protoc Bioinformatics. 2012 Dec;Chapter 1:1.14.1-1.14.27. doi: 10.1002/0471250953.bi0114s40. Curr Protoc Bioinformatics. 2012. PMID: 23255149 Free PMC article.
The Rat Genome Database 2013--data, tools and users.
Laulederkind SJ, Hayman GT, Wang SJ, Smith JR, Lowry TF, Nigam R, Petri V, de Pons J, Dwinell MR, Shimoyama M, Munzenmaier DH, Worthey EA, Jacob HJ. Laulederkind SJ, et al. Among authors: nigam r. Brief Bioinform. 2013 Jul;14(4):520-6. doi: 10.1093/bib/bbt007. Epub 2013 Feb 22. Brief Bioinform. 2013. PMID: 23434633 Free PMC article.
PhenoMiner: quantitative phenotype curation at the rat genome database.
Laulederkind SJ, Liu W, Smith JR, Hayman GT, Wang SJ, Nigam R, Petri V, Lowry TF, de Pons J, Dwinell MR, Shimoyama M. Laulederkind SJ, et al. Among authors: nigam r. Database (Oxford). 2013 Apr 19;2013:bat015. doi: 10.1093/database/bat015. Print 2013. Database (Oxford). 2013. PMID: 23603846 Free PMC article.
182 results