Cock PJ - Search Results

1

Using Tablet for visual exploration of second-generation sequencing data.

Milne I, Stephen G, Bayer M, Cock PJ, Pritchard L, Cardle L, Shaw PD, Marshall D. Milne I, et al. Among authors: cock pj. Brief Bioinform. 2013 Mar;14(2):193-202. doi: 10.1093/bib/bbs012. Epub 2012 Mar 24. Brief Bioinform. 2013. PMID: 22445902

2

Identification and localisation of the NB-LRR gene family within the potato genome.

Jupe F, Pritchard L, Etherington GJ, Mackenzie K, Cock PJ, Wright F, Sharma SK, Bolser D, Bryan GJ, Jones JD, Hein I. Jupe F, et al. Among authors: cock pj. BMC Genomics. 2012 Feb 15;13:75. doi: 10.1186/1471-2164-13-75. BMC Genomics. 2012. PMID: 22336098 Free PMC article.

3

Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB-LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations.

Jupe F, Witek K, Verweij W, Sliwka J, Pritchard L, Etherington GJ, Maclean D, Cock PJ, Leggett RM, Bryan GJ, Cardle L, Hein I, Jones JD. Jupe F, et al. Among authors: cock pj. Plant J. 2013 Nov;76(3):530-44. doi: 10.1111/tpj.12307. Epub 2013 Oct 8. Plant J. 2013. PMID: 23937694 Free PMC article.

4

Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology.

Cock PJ, Grüning BA, Paszkiewicz K, Pritchard L. Cock PJ, et al. PeerJ. 2013 Sep 17;1:e167. doi: 10.7717/peerj.167. eCollection 2013. PeerJ. 2013. PMID: 24109552 Free PMC article.

5

Galaxy as a platform for identifying candidate pathogen effectors.

Cock PJ, Pritchard L. Cock PJ, et al. Methods Mol Biol. 2014;1127:3-15. doi: 10.1007/978-1-62703-986-4_1. Methods Mol Biol. 2014. PMID: 24643548

6

The Bioinformatics Open Source Conference (BOSC) 2013.

Harris NL, Cock PJ, Chapman BA, Goecks J, Hotz HR, Lapp H. Harris NL, et al. Among authors: cock pj. Bioinformatics. 2015 Jan 15;31(2):299-300. doi: 10.1093/bioinformatics/btu413. Epub 2014 Jul 14. Bioinformatics. 2015. PMID: 25024288 Free PMC article.

7

THAPBI PICT-a fast, cautious, and accurate metabarcoding analysis pipeline.

Cock PJA, Cooke DEL, Thorpe P, Pritchard L. Cock PJA, et al. PeerJ. 2023 Aug 18;11:e15648. doi: 10.7717/peerj.15648. eCollection 2023. PeerJ. 2023. PMID: 37609440 Free PMC article.

8

Biopython: freely available Python tools for computational molecular biology and bioinformatics.

Cock PJ, Antao T, Chang JT, Chapman BA, Cox CJ, Dalke A, Friedberg I, Hamelryck T, Kauff F, Wilczynski B, de Hoon MJ. Cock PJ, et al. Bioinformatics. 2009 Jun 1;25(11):1422-3. doi: 10.1093/bioinformatics/btp163. Epub 2009 Mar 20. Bioinformatics. 2009. PMID: 19304878 Free PMC article.

9

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants.

Cock PJ, Fields CJ, Goto N, Heuer ML, Rice PM. Cock PJ, et al. Nucleic Acids Res. 2010 Apr;38(6):1767-71. doi: 10.1093/nar/gkp1137. Epub 2009 Dec 16. Nucleic Acids Res. 2010. PMID: 20015970 Free PMC article. Review.

10

Genetic characterization of the HrpL regulon of the fire blight pathogen Erwinia amylovora reveals novel virulence factors.

McNally RR, Toth IK, Cock PJ, Pritchard L, Hedley PE, Morris JA, Zhao Y, Sundin GW. McNally RR, et al. Among authors: cock pj. Mol Plant Pathol. 2012 Feb;13(2):160-73. doi: 10.1111/j.1364-3703.2011.00738.x. Epub 2011 Aug 10. Mol Plant Pathol. 2012. PMID: 21831138 Free PMC article.

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